View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_low_1 (Length: 788)
Name: NF2220_low_1
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_low_1 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 102 - 770
Target Start/End: Original strand, 48538982 - 48539629
Alignment:
| Q |
102 |
tttaacacctttagcattctgattcggcggcatcttcatgcctttaaattgtgctagatcttgaaaccctttcatctgttgaagttgttgtaactgttgt |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48538982 |
tttaacacctttagcattctgattcggcggcatcttcatgcctttaaattgtgctagatcttgaaaccctttcatctgttgaagttgttgtaactgttgt |
48539081 |
T |
|
| Q |
202 |
tgaagctgaagttgctgctgctgctgaggatttagtccttgtagttgtatttgttgaacacctttgggctggttattgtttccactacccttctggtttt |
301 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48539082 |
tgaagctgaagttgctgctgctgctgaggatttagtccttgtagttgtatttgttgaccacctttgggctggttattgtttccactacccttctggtttt |
48539181 |
T |
|
| Q |
302 |
gattcggacccttgttgttgttatttccgccacctttgccattatcaatttgcatgttctttaactgattaacaaggttgttctggttattattttgatt |
401 |
Q |
| |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48539182 |
gattctgacccttgttgttgttatttccaccacctttgccattatcaatttgcatgttctttaactgattaacaaggttgttctgatt------------ |
48539269 |
T |
|
| Q |
402 |
ttgattattattgttgttgtttggtttaggaacactccataactgggcatgtttcccagattttgcaagcttcttgatgagaacatttgggtccacattc |
501 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48539270 |
---attattgttgttgttgtttggtttgggaacactccataactgagcatgtttcccagattttgcaagcttcttgatgagaacatttgggtccacattc |
48539366 |
T |
|
| Q |
502 |
cctgaaactgtgaccttcccttgttctgcatctatctcagttgtaaatactcctgtca-tacataaacccatattcaacatttactctcaaaattaaggt |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
48539367 |
cctgaaactgtgaccttcccttgttctgcatctatctcagttgtaaatactcctgtcattaca-aaacccatattcaacatttactctcaaaattaaggc |
48539465 |
T |
|
| Q |
601 |
tctattttggatagtaatagtaataattgaaagct-taannnnnnngcttggaaatataaataaatcacaataatattaagttcatacaaacataccatc |
699 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| ||| || | ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48539466 |
actgttttggatagtaatagtaataattgaaagctataattaa-------ggttctgtaaataaatcacaataatattaagtgcatacaaacataccatc |
48539558 |
T |
|
| Q |
700 |
aattttctgtaagattttctttactttatgtttacatccatcacagtgtatgttcacttttagaacagatt |
770 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48539559 |
aattttctgtaagattttctttactttatgtttacatccatcacagtgtatgttcacttttagaacagatt |
48539629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 102 - 770
Target Start/End: Original strand, 48573237 - 48573884
Alignment:
| Q |
102 |
tttaacacctttagcattctgattcggcggcatcttcatgcctttaaattgtgctagatcttgaaaccctttcatctgttgaagttgttgtaactgttgt |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48573237 |
tttaacacctttagcattctgattcggcggcatcttcatgcctttaaattgtgctagatcttgaaaccctttcatctgttgaagttgttgtaactgttgt |
48573336 |
T |
|
| Q |
202 |
tgaagctgaagttgctgctgctgctgaggatttagtccttgtagttgtatttgttgaacacctttgggctggttattgtttccactacccttctggtttt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48573337 |
tgaagctgaagttgctgctgctgctgaggatttagtccttgtagttgtatttgttgaccacctttgggctggttattgtttccactacccttctggtttt |
48573436 |
T |
|
| Q |
302 |
gattcggacccttgttgttgttatttccgccacctttgccattatcaatttgcatgttctttaactgattaacaaggttgttctggttattattttgatt |
401 |
Q |
| |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48573437 |
gattctgacccttgttgttgttatttccaccacctttgccattatcaatttgcatgttctttaactgattaacaaggttgttctgatt------------ |
48573524 |
T |
|
| Q |
402 |
ttgattattattgttgttgtttggtttaggaacactccataactgggcatgtttcccagattttgcaagcttcttgatgagaacatttgggtccacattc |
501 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48573525 |
---attattgttgttgttgtttggtttgggaacactccataactgagcatgtttcccagattttgcaagcttcttgatgagaacatttgggtccacattc |
48573621 |
T |
|
| Q |
502 |
cctgaaactgtgaccttcccttgttctgcatctatctcagttgtaaatactcctgtca-tacataaacccatattcaacatttactctcaaaattaaggt |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
48573622 |
cctgaaactgtgaccttcccttgttctgcatctatctcagttgtaaatactcctgtcattaca-aaacccatattcaacatttactctcaaaattaaggc |
48573720 |
T |
|
| Q |
601 |
tctattttggatagtaatagtaataattgaaagct-taannnnnnngcttggaaatataaataaatcacaataatattaagttcatacaaacataccatc |
699 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||| || | ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48573721 |
actgttttggatagtaatagtaataattgaaagctataattaa-------ggttctgtaaataaatcacaataatattaagtgcatacaaacataccatc |
48573813 |
T |
|
| Q |
700 |
aattttctgtaagattttctttactttatgtttacatccatcacagtgtatgttcacttttagaacagatt |
770 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48573814 |
aattttctgtaagattttctttactttatgtttacatccatcacagtgtatgttcacttttagaacagatt |
48573884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 448 - 542
Target Start/End: Complemental strand, 7657055 - 7656961
Alignment:
| Q |
448 |
gcatgtttcccagattttgcaagcttcttgatgagaacatttgggtccacattccctgaaactgtgaccttcccttgttctgcatctatctcagt |
542 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||| |||||||||||||| |
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| T |
7657055 |
gcatgtttccctgattttgcaagcttcttgatgagaacatttgggtccacatttccagaaacggtcaccttcccttgttcagcatctatctcagt |
7656961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 693 - 766
Target Start/End: Complemental strand, 7656522 - 7656449
Alignment:
| Q |
693 |
taccatcaattttctgtaagattttctttactttatgtttacatccatcacagtgtatgttcacttttagaaca |
766 |
Q |
| |
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|||||||||| ||||| ||||||||||| ||||| || || || || |||||||||||||||||||| |||||| |
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| T |
7656522 |
taccatcaatcttctgcaagattttcttaactttctgcttgcaaccgtcacagtgtatgttcactttgagaaca |
7656449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 460 - 540
Target Start/End: Complemental strand, 7651666 - 7651586
Alignment:
| Q |
460 |
gattttgcaagcttcttgatgagaacatttgggtccacattccctgaaactgtgaccttcccttgttctgcatctatctca |
540 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| | |||||| | ||| | ||||| |||||||| |||||||||| |
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| T |
7651666 |
gattttgcaagcttcttgatgagaacatctgggtctatattcccagcaacaatcacctttccttgttcaatatctatctca |
7651586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 691 - 740
Target Start/End: Original strand, 207583 - 207632
Alignment:
| Q |
691 |
cataccatcaattttctgtaagattttctttactttatgtttacatccat |
740 |
Q |
| |
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|||||||||||||||||| ||||||||||| |||||||| || ||||||| |
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| T |
207583 |
cataccatcaattttctgcaagattttcttgactttatggttgcatccat |
207632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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