View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_low_10 (Length: 498)
Name: NF2220_low_10
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 20013238 - 20013722
Alignment:
| Q |
1 |
ttttattcattgttgtgttacccattgaataccgagactcagcagattatagttatatagcatagttaagaatattttgaatctgttgacatgcacattg |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20013238 |
ttttattcattgttgtgttacccattgaatattgagactcagcagattatagttatatagcatagttaagaatattttgaatctgttgacatgcacattg |
20013337 |
T |
|
| Q |
101 |
attacaaggtactgcattgtgcccaatcaaattgtaccctctccttccaattatcaagttatattttgaccggtaaattgggaatatttaacatgttcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20013338 |
attacaaggtactgcattgtgcccaatcaaattggaccctctccttccaattatcaagttatattttgactggtaaattgggaatatttaacatgttcag |
20013437 |
T |
|
| Q |
201 |
ggtagtgtatgagagttttaaataaatggaaaagtattaagggacttttttattgtaactaataatatgtcaatgtgaattgcaaacttacaattgcttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20013438 |
ggtagtgtatgagagttttaaataaatggaaaagaattaagggacttttttattgtaactaataatatgtcaatgtgaattgcaaacttacaattgcttc |
20013537 |
T |
|
| Q |
301 |
aacagttgtgttacaatacaccatatattagacgaataaccacatacatgtatccaagttataggttaaatattttcaattcc---tagtaagatatggc |
397 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
20013538 |
aacagttgtgttacaatagaccatatattagacgaataaccacatacatgtatccaagttataggttaaatattttcaattccaagtagtaagatatggc |
20013637 |
T |
|
| Q |
398 |
tacgttcaactttagggtcgtgcccatcaatttcccattcaaaagagacactaagttgaaccttttcataaagggagataaagct |
482 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20013638 |
tacgttcaactttagggtcgcgcccttcaatttcccattcaaaagagacactaagttgaaccttttcataaagggagataaagct |
20013722 |
T |
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