View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_low_11 (Length: 488)
Name: NF2220_low_11
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Original strand, 60728 - 61101
Alignment:
| Q |
17 |
ctctaaccataaggagtaatttgacaacgtgtttaaattaacatttttcctaattaagccagacatattcaacaactattatttaaaagagagaatttga |
116 |
Q |
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| T |
60728 |
ctctaaccataaggagtaatttgacaacgtgtttaaattaacatttttcctaattaagccagacatattcaacaactattatttaaaagagagaatttga |
60827 |
T |
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| Q |
117 |
aaggtacttgtatagttgtattccgtcgtattattataatgtaatgtgacactacacctaaagttattttataatgtcacgagattaatttggaatgcac |
216 |
Q |
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| T |
60828 |
aaggtacttgtatagttgtattccgtcgtattattataatgtaatgtgacactgcacctaaagttattttataatgtcacgagattaatttggaatgcac |
60927 |
T |
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| Q |
217 |
ctttggactaacggcaaaccgaattaattaactgatttagacaagaacctgcactacgttcaagactaagcttgcaataaggaaattactactaatgcat |
316 |
Q |
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| T |
60928 |
ctttggactaacggcaaaccgaattaattaactgatttagacaagaacctgcactacgttcaagactaagcttgcaataaggaaattactactaatgcat |
61027 |
T |
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| Q |
317 |
ttaactagaataacgtggcacatttttaattaaggaaactaaatagcttttcaatgaaataaaacatgtactta |
390 |
Q |
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| T |
61028 |
ttacctagaataccgtggcacatttttaattaaggaaactaaatagcttttcaatgaaataaaacatgtactta |
61101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 419 - 472
Target Start/End: Original strand, 61145 - 61198
Alignment:
| Q |
419 |
ggtgtaaactgggtatgtatcctctgtgtgcaactgcagagattaattcctcga |
472 |
Q |
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| T |
61145 |
ggtgtaaattgggtatgtatcctccgtgtgcaactgcagagattaatccctcga |
61198 |
T |
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