View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2220_low_15 (Length: 431)

Name: NF2220_low_15
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2220_low_15
NF2220_low_15
[»] chr3 (2 HSPs)
chr3 (171-214)||(20945387-20945430)
chr3 (171-214)||(26517302-26517345)
[»] chr5 (3 HSPs)
chr5 (180-214)||(35569089-35569123)
chr5 (171-214)||(38972210-38972253)
chr5 (172-214)||(27587816-27587858)
[»] chr8 (2 HSPs)
chr8 (169-214)||(14577738-14577783)
chr8 (182-211)||(14522693-14522722)
[»] chr2 (4 HSPs)
chr2 (169-214)||(2131732-2131777)
chr2 (180-214)||(27749498-27749532)
chr2 (181-214)||(45214712-45214745)
chr2 (182-214)||(38982164-38982196)
[»] chr1 (4 HSPs)
chr1 (169-214)||(27531073-27531118)
chr1 (171-214)||(13723562-13723605)
chr1 (171-214)||(23982676-23982719)
chr1 (184-214)||(32152147-32152177)
[»] chr4 (4 HSPs)
chr4 (169-212)||(50165868-50165911)
chr4 (169-211)||(29584869-29584911)
chr4 (184-214)||(41920123-41920153)
chr4 (169-214)||(54701372-54701417)
[»] chr6 (1 HSPs)
chr6 (181-214)||(22410929-22410962)


Alignment Details
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 20945430 - 20945387
Alignment:
Q  171 tatgtaaataccctttacatttttcacatttcttaagaaaagtt 214  Q
    |||||||| ||| |||||||||||||||||||||||||||||||    
T  20945430 tatgtaaacaccttttacatttttcacatttcttaagaaaagtt 20945387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 26517345 - 26517302
Alignment:
Q  171 tatgtaaataccctttacatttttcacatttcttaagaaaagtt 214  Q
    ||||||| | |||||| |||||||||||||||||||||||||||    
T  26517345 tatgtaagttccctttgcatttttcacatttcttaagaaaagtt 26517302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 35569123 - 35569089
Alignment:
Q  180 accctttacatttttcacatttcttaagaaaagtt 214  Q
    |||||||||||||||||||||||||||||||||||    
T  35569123 accctttacatttttcacatttcttaagaaaagtt 35569089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 38972253 - 38972210
Alignment:
Q  171 tatgtaaataccctttacatttttcacatttcttaagaaaagtt 214  Q
    |||||||| ||  |||||||||||||||||||||||||||||||    
T  38972253 tatgtaaacacattttacatttttcacatttcttaagaaaagtt 38972210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 27587816 - 27587858
Alignment:
Q  172 atgtaaataccctttacatttttcacatttcttaagaaaagtt 214  Q
    |||||||  |||||||| |||||||||||||||||||||||||    
T  27587816 atgtaaactccctttacttttttcacatttcttaagaaaagtt 27587858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 14577783 - 14577738
Alignment:
Q  169 tgtatgtaaataccctttacatttttcacatttcttaagaaaagtt 214  Q
    |||||||||  | |||||||||||||||||||||||||||||||||    
T  14577783 tgtatgtaagcatcctttacatttttcacatttcttaagaaaagtt 14577738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 211
Target Start/End: Complemental strand, 14522722 - 14522693
Alignment:
Q  182 cctttacatttttcacatttcttaagaaaa 211  Q
    ||||||||||||||||||||||||||||||    
T  14522722 cctttacatttttcacatttcttaagaaaa 14522693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 2131732 - 2131777
Alignment:
Q  169 tgtatgtaaataccctttacatttttcacatttcttaagaaaagtt 214  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||||    
T  2131732 tgtatctaaataccttttacattttttacatttcttaagaaaagtt 2131777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 27749498 - 27749532
Alignment:
Q  180 accctttacatttttcacatttcttaagaaaagtt 214  Q
    ||||||||| |||||||||||||||||||||||||    
T  27749498 accctttacttttttcacatttcttaagaaaagtt 27749532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 45214712 - 45214745
Alignment:
Q  181 ccctttacatttttcacatttcttaagaaaagtt 214  Q
    |||||| |||||||||||||||||||||||||||    
T  45214712 ccctttgcatttttcacatttcttaagaaaagtt 45214745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 38982196 - 38982164
Alignment:
Q  182 cctttacatttttcacatttcttaagaaaagtt 214  Q
    ||||||||||||| |||||||||||||||||||    
T  38982196 cctttacattttttacatttcttaagaaaagtt 38982164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 27531073 - 27531118
Alignment:
Q  169 tgtatgtaaataccctttacatttttcacatttcttaagaaaagtt 214  Q
    ||||||||| | |||||| |||||||||||||||||||||||||||    
T  27531073 tgtatgtaagttccctttgcatttttcacatttcttaagaaaagtt 27531118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 13723605 - 13723562
Alignment:
Q  171 tatgtaaataccctttacatttttcacatttcttaagaaaagtt 214  Q
    |||||||  ||||||| |||||||||||||||||||||||||||    
T  13723605 tatgtaagcaccctttgcatttttcacatttcttaagaaaagtt 13723562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 23982719 - 23982676
Alignment:
Q  171 tatgtaaataccctttacatttttcacatttcttaagaaaagtt 214  Q
    ||||||| | |||||| |||||||||||||||||||||||||||    
T  23982719 tatgtaagtcccctttgcatttttcacatttcttaagaaaagtt 23982676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 32152147 - 32152177
Alignment:
Q  184 tttacatttttcacatttcttaagaaaagtt 214  Q
    |||||||||||||||||||||||||||||||    
T  32152147 tttacatttttcacatttcttaagaaaagtt 32152177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 50165911 - 50165868
Alignment:
Q  169 tgtatgtaaataccctttacatttttcacatttcttaagaaaag 212  Q
    |||||||||| ||| ||||||||||||| |||||||||||||||    
T  50165911 tgtatgtaaacaccttttacatttttcatatttcttaagaaaag 50165868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 29584869 - 29584911
Alignment:
Q  169 tgtatgtaaataccctttacatttttcacatttcttaagaaaa 211  Q
    |||||||||  ||||||| ||||||||||||||||||||||||    
T  29584869 tgtatgtaagcaccctttgcatttttcacatttcttaagaaaa 29584911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 41920153 - 41920123
Alignment:
Q  184 tttacatttttcacatttcttaagaaaagtt 214  Q
    |||||||||||||||||||||||||||||||    
T  41920153 tttacatttttcacatttcttaagaaaagtt 41920123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 54701417 - 54701372
Alignment:
Q  169 tgtatgtaaataccctttacatttttcacatttcttaagaaaagtt 214  Q
    ||||||||| |  |||||||||||||||||||| ||||||||||||    
T  54701417 tgtatgtaagtctcctttacatttttcacattttttaagaaaagtt 54701372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 22410962 - 22410929
Alignment:
Q  181 ccctttacatttttcacatttcttaagaaaagtt 214  Q
    |||||||| |||||||||||||||||||||||||    
T  22410962 ccctttacttttttcacatttcttaagaaaagtt 22410929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University