View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2220_low_16 (Length: 430)

Name: NF2220_low_16
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2220_low_16
NF2220_low_16
[»] chr6 (15 HSPs)
chr6 (1-423)||(18994022-18994444)
chr6 (87-395)||(12424026-12424334)
chr6 (181-393)||(14184362-14184574)
chr6 (159-395)||(27860732-27860968)
chr6 (160-395)||(14921046-14921281)
chr6 (296-395)||(19276998-19277096)
chr6 (324-395)||(13823329-13823398)
chr6 (344-395)||(34064266-34064317)
chr6 (296-394)||(12449504-12449602)
chr6 (325-395)||(22497248-22497318)
chr6 (343-394)||(9403244-9403295)
chr6 (343-394)||(19730559-19730610)
chr6 (296-383)||(33596944-33597031)
chr6 (313-383)||(16131051-16131121)
chr6 (316-378)||(22572132-22572194)
[»] scaffold0074 (2 HSPs)
scaffold0074 (94-258)||(51040-51204)
scaffold0074 (254-421)||(53152-53319)
[»] chr8 (11 HSPs)
chr8 (60-372)||(16214721-16215033)
chr8 (153-395)||(4565171-4565413)
chr8 (123-339)||(17715624-17715840)
chr8 (211-421)||(14666676-14666886)
chr8 (153-340)||(24677389-24677576)
chr8 (159-387)||(24576368-24576595)
chr8 (303-395)||(11776171-11776263)
chr8 (343-384)||(5859897-5859938)
chr8 (344-372)||(3459453-3459481)
chr8 (343-395)||(20055635-20055686)
chr8 (324-372)||(21416832-21416880)
[»] chr7 (14 HSPs)
chr7 (6-395)||(18774052-18774441)
chr7 (150-421)||(4813706-4813977)
chr7 (152-395)||(5925252-5925495)
chr7 (160-421)||(4781285-4781546)
chr7 (169-372)||(1979156-1979360)
chr7 (153-395)||(12264903-12265145)
chr7 (154-395)||(20034386-20034627)
chr7 (154-301)||(20044763-20044910)
chr7 (271-418)||(23629093-23629240)
chr7 (230-395)||(17150031-17150196)
chr7 (301-372)||(16987018-16987089)
chr7 (123-189)||(23629288-23629354)
chr7 (324-395)||(13292072-13292143)
chr7 (347-395)||(34854314-34854362)
[»] chr1 (7 HSPs)
chr1 (161-421)||(3590871-3591132)
chr1 (159-393)||(48637612-48637846)
chr1 (198-401)||(21098669-21098872)
chr1 (301-393)||(14254968-14255060)
chr1 (159-395)||(25408167-25408403)
chr1 (316-395)||(23728761-23728840)
chr1 (343-387)||(4601455-4601499)
[»] chr3 (9 HSPs)
chr3 (150-393)||(17396796-17397039)
chr3 (160-394)||(20118762-20118996)
chr3 (116-394)||(20122521-20122798)
chr3 (301-395)||(14860025-14860119)
chr3 (343-383)||(16704485-16704525)
chr3 (300-395)||(25496009-25496104)
chr3 (301-378)||(1770914-1770991)
chr3 (347-385)||(12108500-12108538)
chr3 (350-395)||(12731536-12731581)
[»] chr4 (13 HSPs)
chr4 (163-395)||(1638106-1638338)
chr4 (161-395)||(18463871-18464105)
chr4 (153-421)||(19564006-19564274)
chr4 (152-395)||(25066215-25066458)
chr4 (243-421)||(12415480-12415658)
chr4 (229-421)||(17110742-17110934)
chr4 (298-394)||(5518612-5518708)
chr4 (347-394)||(15514533-15514580)
chr4 (349-395)||(14601989-14602035)
chr4 (303-395)||(15742081-15742173)
chr4 (301-383)||(2674500-2674582)
chr4 (343-372)||(16012440-16012469)
chr4 (324-372)||(12683879-12683927)
[»] chr5 (10 HSPs)
chr5 (7-421)||(18799824-18800238)
chr5 (210-408)||(25679081-25679279)
chr5 (209-395)||(21213314-21213500)
chr5 (211-405)||(18803978-18804172)
chr5 (237-393)||(26347953-26348109)
chr5 (316-395)||(22865832-22865911)
chr5 (301-395)||(25537476-25537570)
chr5 (301-385)||(31202301-31202385)
chr5 (340-395)||(24647359-24647414)
chr5 (301-394)||(24546413-24546507)
[»] chr2 (9 HSPs)
chr2 (211-419)||(24318959-24319167)
chr2 (211-368)||(28425975-28426132)
chr2 (175-395)||(24157106-24157326)
chr2 (187-395)||(29711087-29711295)
chr2 (301-395)||(15390511-15390605)
chr2 (324-387)||(19290546-19290609)
chr2 (326-387)||(15825233-15825294)
chr2 (343-383)||(3586446-3586486)
chr2 (347-395)||(19050407-19050455)
[»] scaffold0543 (1 HSPs)
scaffold0543 (152-402)||(4722-4975)
[»] scaffold0492 (1 HSPs)
scaffold0492 (152-402)||(6268-6521)
[»] scaffold0096 (1 HSPs)
scaffold0096 (211-395)||(42319-42503)
[»] scaffold0013 (2 HSPs)
scaffold0013 (159-284)||(4237-4362)
scaffold0013 (347-401)||(4396-4450)
[»] scaffold0103 (1 HSPs)
scaffold0103 (198-401)||(40861-41064)
[»] scaffold0380 (1 HSPs)
scaffold0380 (301-395)||(6786-6880)
[»] scaffold0002 (2 HSPs)
scaffold0002 (341-395)||(120977-121031)
scaffold0002 (345-395)||(379787-379837)
[»] scaffold0205 (1 HSPs)
scaffold0205 (301-395)||(22957-23051)
[»] scaffold0005 (1 HSPs)
scaffold0005 (349-395)||(215343-215389)
[»] scaffold0294 (1 HSPs)
scaffold0294 (301-385)||(168-252)
[»] scaffold0092 (1 HSPs)
scaffold0092 (187-284)||(21430-21527)


Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 18994444 - 18994022
Alignment:
Q  1 tggaggccacactctatccgggcaggcttcagttcacgacaaaagcatcgtgggacaccggactaagccgtccacgagcgcttttgatcaaaagcctcct 100  Q
    |||| |||||||||| | |||||||||||||||||  ||||||||||||| ||| ||||||||||||||||| |||||||  |||||||||| |||||||    
T  18994444 tggacgccacactctttacgggcaggcttcagttcctgacaaaagcatcgagggccaccggactaagccgtcgacgagcgtctttgatcaaacgcctcct 18994345  T
Q  101 ttttctgctaaatttattgatccataaaggcatcaatagcttggaggtcaactgttctagaccactcacacgactacacatgtacaataatatgtcgcct 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18994344 ttttctgctaaatttattgatccataaaggcatcaatagcttagaggtcaactgttctggaccactcacacgactacacatgtacaataatatgtcgcct 18994245  T
Q  201 tgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18994244 tgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgct 18994145  T
Q  301 cctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttttaataa 400  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18994144 cctaatcaaacaccgcataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttttaacaa 18994045  T
Q  401 ctctcctaagccttttctctctg 423  Q
    |||||||||||||||||||||||    
T  18994044 ctctcctaagccttttctctctg 18994022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 87 - 395
Target Start/End: Original strand, 12424026 - 12424334
Alignment:
Q  87 atcaaaagcctcctttttctgctaaatttattgatccataaaggcatcaatagcttggaggtcaactgttctagaccactcacacgactacacatgtaca 186  Q
    |||||| ||||||||| |||||||||   ||||| ||||||||||||||||  ||||  ||  |||| |||| ||||||||||||| |||||| ||||||    
T  12424026 atcaaatgcctcctttctctgctaaagccattgagccataaaggcatcaatgacttgcggggaaacttttctggaccactcacacggctacacttgtaca 12424125  T
Q  187 ataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatt 286  Q
    |||||||| ||||||  || ||||||| ||||||||||  | |||| ||  ||| ||||| ||||||||| || ||||||||  ||||||||||||||      
T  12424126 ataatatgccgccttagggctacgcacccaaaggagcacaccaacttgcacgcgccgtgcaacactggagtacgcctccttgatgggatcacgctacacg 12424225  T
Q  287 tgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacac 386  Q
    |||||  ||||||| ||||||| |  || ||||| | ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| | |||||||    
T  12424226 tgtcctttcccgcttctaatcacatgccgcataacccggagacggttatgtcacgagcgcgcctatataagggtgaacttgcttcacccttaaggtacac 12424325  T
Q  387 aacactttt 395  Q
    |||||||||    
T  12424326 aacactttt 12424334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 181 - 393
Target Start/End: Original strand, 14184362 - 14184574
Alignment:
Q  181 tgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgc 280  Q
    |||||||||||||| | |||| | | ||| ||||||||||||||||  |||| | || ||||||| | |  || |||||||||||  | ||| |||||||    
T  14184362 tgtacaataatatgccaccttaaagctacccactcaaaggagcatgtcaacttgtctacgtcgtgtcgcgatgcagcacacctccaagtcggaatcacgc 14184461  T
Q  281 tacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagg 380  Q
    ||||  |||||||||||| ||||||||| || || ||||| | | ||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||| |    
T  14184462 tacacgtgtccactcccgttcctaatcacacgcctcataacccgaagatggttatgccacgagcgcacctatataagggtgaacttgcttcaccctcaag 14184561  T
Q  381 gtacacaacactt 393  Q
    |||||||||||||    
T  14184562 gtacacaacactt 14184574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 159 - 395
Target Start/End: Original strand, 27860732 - 27860968
Alignment:
Q  159 agaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagca 258  Q
    ||||||||||||||  ||||| || || |||||| | | |||| ||  ||||||||||| ||| || || || | ||||||  | |||||||| ||||||    
T  27860732 agaccactcacacggttacacctggaccataatacgcctccttaagactacgcactcaagggaacacgccaagttgcctgcaccatgccacacaggagca 27860831  T
Q  259 cacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagg 358  Q
    |||||||| ||   ||||||  ||||  |||||   |||||||||||||| || || ||||| | ||||||||||||| |  |  |||||||||| ||||    
T  27860832 cacctcctcgcaaagatcactatacacctgtccttccccgctcctaatcacacgccgcataacccggagacggttatggccaacacgcgcctataaaagg 27860931  T
Q  359 gtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||||||||||| |||||  ||||||| |||||||    
T  27860932 gtgaacttgcttcaccctcaaagtacacatcactttt 27860968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 395
Target Start/End: Original strand, 14921046 - 14921281
Alignment:
Q  160 gaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcac 259  Q
    ||||||||||||| ||| || |||||||||||||| |||||| ||| | | ||||||||||||||  | |||  | ||||  ||||| | ||   |||||    
T  14921046 gaccactcacacggctatacgtgtacaataatatgccgccttaaggctgcacactcaaaggagcacaccaacatgtctgcaccgtgcaataccatagcac 14921145  T
Q  260 acctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataaggg 359  Q
     |||| |||  |||||||||| |||  |||||   |||||||||||||| || || |||||   | ||||||||||||||  ||| |||||||||||| |    
T  14921146 gcctcattgttgggatcacgcaacacgtgtccttccccgctcctaatcatacgccgcataactcgaagacggttatgccatgagcacgcctatataagtg 14921245  T
Q  360 tgaacttgcttcaacctcagggtacacaacactttt 395  Q
    ||||||||||||| ||||   | |||||||||||||    
T  14921246 tgaacttgcttcaccctccaaggacacaacactttt 14921281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 395
Target Start/End: Original strand, 19276998 - 19277096
Alignment:
Q  296 ccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    ||||||||||||| || || ||||| | | ||||||||||| |  |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  19276998 ccgctcctaatcatacgccgcataaccag-agacggttatgaccaaagcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcactttt 19277096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 395
Target Start/End: Original strand, 13823329 - 13823398
Alignment:
Q  324 ggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    ||||||||||||||||  || |||||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  13823329 ggagacggttatgcca--agtgcgcctatataaaggtgaacttgcttcaccctcaaggtacacaacactttt 13823398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 395
Target Start/End: Complemental strand, 34064317 - 34064266
Alignment:
Q  344 cgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  34064317 cgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcactttt 34064266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 394
Target Start/End: Original strand, 12449504 - 12449602
Alignment:
Q  296 ccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttt 394  Q
    |||| |||||||| ||||  ||||| |||||||| |||||| |  | |||||||||||||||||| |||||| |||| ||||| |||||||| ||||||    
T  12449504 ccgcccctaatcacacactgcataacctggagacagttatgaccaacgcgcgcctatataagggtaaacttgattcaccctcaaggtacacatcacttt 12449602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 22497248 - 22497318
Alignment:
Q  325 gagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||| ||||||||||  |||| | ||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  22497248 gagatggttatgccatgagcgtgtctatatatgggtgaacttgcttcaccctcaaggtacacaacactttt 22497318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 394
Target Start/End: Complemental strand, 9403295 - 9403244
Alignment:
Q  343 gcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttt 394  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  9403295 gcgcacctatataagggtgaacttgcttcaccctcaaggtacacatcacttt 9403244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 394
Target Start/End: Original strand, 19730559 - 19730610
Alignment:
Q  343 gcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttt 394  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  19730559 gcgcacctatataagggtgaacttgcttcaccctcaaggtacacatcacttt 19730610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 383
Target Start/End: Complemental strand, 33597031 - 33596944
Alignment:
Q  296 ccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggta 383  Q
    |||| |||||||| || || ||||||| || |||  ||||||   ||||||||||||||||| |||||||||||||| ||||| ||||    
T  33597031 ccgcccctaatcatacgccgcataatccggtgacaattatgctcaaagcgcgcctatataagagtgaacttgcttcatcctcaaggta 33596944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 16131121 - 16131051
Alignment:
Q  313 ccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggta 383  Q
    |||||||||| |||||| |||||||   | |||||||||||||||||| |||||| |||| ||||| ||||    
T  16131121 ccacataatccggagacagttatgcttaatgcgcgcctatataagggtaaacttgtttcaccctcaaggta 16131051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 22572194 - 22572132
Alignment:
Q  316 cataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctca 378  Q
    ||||| ||||||||||||||||   | ||||||| |||||| ||||||||||||||| |||||    
T  22572194 cataacctggagacggttatgctcaacgcgcgccaatataaaggtgaacttgcttcaccctca 22572132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 94 - 258
Target Start/End: Original strand, 51040 - 51204
Alignment:
Q  94 gcctcctttttctgctaaatttattgatccataaaggcatcaatagcttggaggtcaactgttctagaccactcacacgactacacatgtacaataatat 193  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51040 gcctcctttttctgctaaatttattgatccataaaggcatcaacagcttggaggtcaactgttctggaccactcacacgactacacatgtacaataatat 51139  T
Q  194 gtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagca 258  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  51140 gtcgccttgaggttacgcactcaaaggagcatgccaactcgactgcgtcgtgccacactggagca 51204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 254 - 421
Target Start/End: Original strand, 53152 - 53319
Alignment:
Q  254 gagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctata 353  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| ||||||||||||    
T  53152 gagcacacctccttgccgagatcacgctacatttgtccactcccgctcctaatcaaacaccgcataacctagagacggttatgccacgagcgcgcctata 53251  T
Q  354 taagggtgaacttgcttcaacctcagggtacacaacacttttaataactctcctaagccttttctctc 421  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  53252 taagggtgaacttgcttcaacctctgggtacacaacacttttaacaactctcctaagccttttctctc 53319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 5e-72; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 60 - 372
Target Start/End: Complemental strand, 16215033 - 16214721
Alignment:
Q  60 ggactaagccgtccacgagcgcttttgatcaaaagcctcctttttctgctaaatttattgatccataaaggcatcaatagcttggaggtcaactgttcta 159  Q
    ||||||||||||| |||||||| ||||||| || ||||||||| | |||||||   ||||| |||||||||||||||   ||||| || ||||||||||     
T  16215033 ggactaagccgtcgacgagcgcctttgatcgaacgcctcctttctatgctaaagccattgagccataaaggcatcaacgacttggggg-caactgttctg 16214935  T
Q  160 gaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatg-cgaactcgcctgcgtcgtgccacactggagca 258  Q
    ||||||||||||| |||||  |||||||||||| | |||||| | | ||| |||||||||||||| | | |||||||||||| ||||| ||| |||||||    
T  16214934 gaccactcacacgcctacatgtgtacaataatacgccgccttcatgctacacactcaaaggagcacgacaaactcgcctgcgccgtgcaacagtggagca 16214835  T
Q  259 cacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagg 358  Q
    |||||||||| |||||||| ||||||  |||||||||| | |||||| || ||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  16214834 cacctccttgtcgggatcatgctacacgtgtccactcctgttcctaaccacacaccgcataacccggagacggttatgccacaagcgcgcctatataagg 16214735  T
Q  359 gtgaacttgcttca 372  Q
    ||||||||||||||    
T  16214734 gtgaacttgcttca 16214721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 153 - 395
Target Start/End: Original strand, 4565171 - 4565413
Alignment:
Q  153 tgttctagaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacact 252  Q
    |||||| || |||||||||| |||||||||||||||||||| ||||||| |||  || ||||||| |||||| || ||||  |||||| | ||| |||||    
T  4565171 tgttctggatcactcacacggctacacatgtacaataatatatcgccttaaggccacacactcaagggagcacgccaacttacctgcgccatgcaacact 4565270  T
Q  253 ggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctat 352  Q
    ||||||| ||||||||  ||||||| ||||||  |||||  |||||||||  |||| || || ||||| | |||||| |||||||||| ||||||| |||    
T  4565271 ggagcacgcctccttgttgggatcaggctacacgtgtcctttcccgctccggatcacacgccgcataacccggagacagttatgccacgagcgcgcttat 4565370  T
Q  353 ataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  4565371 ataagggtgaacttgcttcaccctcaaggtacacaacactttt 4565413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 123 - 339
Target Start/End: Original strand, 17715624 - 17715840
Alignment:
Q  123 cataaaggcatcaatagcttggaggtcaactgttctagaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggag 222  Q
    ||||||| ||||||  |||||| ||  || |||||| ||||||||||||| |||||| ||| ||||| |||| |||||  |||   | ||||||||||||    
T  17715624 cataaagacatcaacggcttggggggaaattgttctggaccactcacacgcctacacgtgtgcaatattatgccgcctaaaggcctcacactcaaaggag 17715723  T
Q  223 catgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatc 322  Q
    || ||  |||||| |||||||||| ||||||||| |  ||||| || |||||||| ||||||| ||||||||||||||| |||||| || || ||||| |    
T  17715724 cacgcctactcgcatgcgtcgtgctacactggagtaagcctccctgtcgggatcatgctacatgtgtccactcccgctcttaatcatacgccgcataacc 17715823  T
Q  323 tggagacggttatgcca 339  Q
     | || |||||||||||    
T  17715824 cgaaggcggttatgcca 17715840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 211 - 421
Target Start/End: Original strand, 14666676 - 14666886
Alignment:
Q  211 cactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaa 310  Q
    ||||||| |||||| |  ||||||| |||| | ||||||||||||  |  | ||||||||| ||||||||||||  ||||||||||| ||| |||||| |    
T  14666676 cactcaagggagcacgtcaactcgcatgcgccatgccacactggactatgcttccttgccgagatcacgctacacgtgtccactccctctcttaatcata 14666775  T
Q  311 caccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttttaataactctcctaag 410  Q
    |||  ||||| | |||||| |||||||||  || ||||||| |||||||||||||| ||||| ||| | ||||||||| |||||| | |||| ||| |||    
T  14666776 cacagcataacccggagactgttatgccaagagtgcgcctacataagggtgaactttcttcacccttaaggtacacaaaacttttcacaactgtccaaag 14666875  T
Q  411 ccttttctctc 421  Q
      |||||||||    
T  14666876 aattttctctc 14666886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 340
Target Start/End: Original strand, 24677389 - 24677576
Alignment:
Q  153 tgttctagaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacact 252  Q
    |||||| ||||||||||||   ||||  ||| |||||||| | |||||| ||| |||||| |||||| ||||  | |||  |||||||||||||||||||    
T  24677389 tgttctggaccactcacacagatacatgtgtgcaataatacgccgccttaaggctacgcattcaaagaagcacaccaacctgcctgcgtcgtgccacact 24677488  T
Q  253 ggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccac 340  Q
     ||| |  ||||||||||||||||| ||||||| |||||   | |||||||||||| || || ||||| |  ||||||||||||||||    
T  24677489 agagtatgcctccttgccgggatcatgctacatgtgtccttccacgctcctaatcacacgccgcataacccagagacggttatgccac 24677576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 159 - 387
Target Start/End: Original strand, 24576368 - 24576595
Alignment:
Q  159 agaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagca 258  Q
    |||||||||||| | ||||||||| || ||||||||||||||| ||| ||||  ||||| ||| || || || |  ||||| ||||||||||  || |||    
T  24576368 agaccactcacatggctacacatgaactataatatgtcgccttaaggctacgtgctcaagggatcaggccaattttcctgcatcgtgccacataggtgca 24576467  T
Q  259 cacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagg 358  Q
    |||||||| ||  ||||||||||||   |||||    ||||||||||||| ||  | ||||| |||||| ||||||||    | ||| ||||||||||||    
T  24576468 cacctcctcgcaaggatcacgctac-catgtccttctccgctcctaatcacacgtcgcataacctggaggcggttatgatcaacgcgtgcctatataagg 24576566  T
Q  359 gtgaacttgcttcaacctcagggtacaca 387  Q
    |||||||| ||||| ||||| ||||||||    
T  24576567 gtgaacttccttcaccctcaaggtacaca 24576595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 395
Target Start/End: Original strand, 11776171 - 11776263
Alignment:
Q  303 taatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||| || || ||| ||| |||||||||||||||  | |||| ||||||||| |||||||||| |||| ||||| |||||| | |||||||    
T  11776171 taatcacacgccgcattatccggagacggttatgcccaacgcgcacctatataaaggtgaacttgtttcaccctcaaggtacatatcactttt 11776263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 384
Target Start/End: Complemental strand, 5859938 - 5859897
Alignment:
Q  343 gcgcgcctatataagggtgaacttgcttcaacctcagggtac 384  Q
    |||||||||||||||||||| |||||||||| |||| |||||    
T  5859938 gcgcgcctatataagggtgaccttgcttcaatctcaaggtac 5859897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 372
Target Start/End: Original strand, 3459453 - 3459481
Alignment:
Q  344 cgcgcctatataagggtgaacttgcttca 372  Q
    |||||||||||||||||||||||||||||    
T  3459453 cgcgcctatataagggtgaacttgcttca 3459481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 20055686 - 20055635
Alignment:
Q  343 gcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||||||||||||| ||||||||||||| ||| | |||||||| |||||||    
T  20055686 gcgcgcctatataaggatgaacttgcttcaccct-aaggtacacatcactttt 20055635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 21416880 - 21416832
Alignment:
Q  324 ggagacggttatgccacaagcgcgcctatataagggtgaacttgcttca 372  Q
    |||||||||||||||  | |||| |||||| ||||||||||||||||||    
T  21416880 ggagacggttatgcccaacgcgcccctatacaagggtgaacttgcttca 21416832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 7e-56; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 6 - 395
Target Start/End: Complemental strand, 18774441 - 18774052
Alignment:
Q  6 gccacactctatccgggcaggcttcagttcacgacaaaa-gcatcgtgggacaccggactaagccgtccacgagcgcttttgatcaaaagcctccttttt 104  Q
    |||||||||| | ||||| |||||||||||  |||| || |||| | ||| |||||||||||| |||| ||||||   ||||||| |  ||||||||| |    
T  18774441 gccacactctttgcgggcgggcttcagttcctgacacaacgcattgagggccaccggactaagtcgtcgacgagcagctttgatcgatcgcctcctttct 18774342  T
Q  105 ctgctaaatttattgatccataaaggcatcaatagcttggaggtcaactgttctagaccactcacacgactacacatgtacaataatatgtcgccttgag 204  Q
    || || ||   ||||| |||||||||||||||   ||||| || |||||||||| ||||||||||||| |||||||||||||||| || | |||||  |     
T  18774341 ctacttaaaccattgagccataaaggcatcaacgacttggggg-caactgttcttgaccactcacacggctacacatgtacaatattacgccgcctcaat 18774243  T
Q  205 gttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctccta 304  Q
    ||  |  |||||| ||| || || |||||  |||||||||||||||||||||||| |||||||| ||||||||| |||||  ||||||||||| ||||||    
T  18774242 gtgtcatactcaagggaacacgccaactcatctgcgtcgtgccacactggagcacgcctccttgacgggatcacactacacgtgtccactcccactccta 18774143  T
Q  305 atcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||| || || |||||   ||||||||||||||||  ||| || ||||||||||||||| ||| |||| ||||| ||||||||||||||||    
T  18774142 atcatacgccgcataactcggagacggttatgccaagagcacgtctatataagggtgaatttgtttcaccctcaaggtacacaacactttt 18774052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 150 - 421
Target Start/End: Original strand, 4813706 - 4813977
Alignment:
Q  150 aactgttctagaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccac 249  Q
    |||||| || ||||||||||| |||||||||||||||||| || |  ||||  ||| |  ||||  ||||||||| ||  ||||| |||  ||||||||     
T  4813706 aactgtgctggaccactcacatgactacacatgtacaatattacgatgcctcaaggctttgcaccaaaaggagcacgccgactcgactgtatcgtgccat 4813805  T
Q  250 actggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcc 349  Q
     || |||||| ||||| || |||||||||||||||  ||| || ||||||||||||||| || ||  |||||| |  || ||||||||||  || |||||    
T  4813806 tctagagcacgcctccctgtcgggatcacgctacacgtgttcattcccgctcctaatcatacgccgtataatccgaggatggttatgccaagagtgcgcc 4813905  T
Q  350 tatataagggtgaacttgcttcaacctcagggtacacaacacttttaataactctcctaagccttttctctc 421  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||  | |||||||||||| ||||| ||||    
T  4813906 tatataagggtgaacttgcttcaccctcaaggtacacaacactttacacaactctcctaagacttttatctc 4813977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 152 - 395
Target Start/End: Original strand, 5925252 - 5925495
Alignment:
Q  152 ctgttctagaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacac 251  Q
    |||||||  |||||||||||| |||||| ||||||||||||   |||||  ||| |||||||||||||||||| |  |||| |||| |   |||| ||||    
T  5925252 ctgttctgaaccactcacacggctacacgtgtacaataatacaccgcctcaaggctacgcactcaaaggagcacgacaacttgcctactatgtgcaacac 5925351  T
Q  252 tggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgccta 351  Q
    ||||| || ||||||| ||||||||||||||||  |||||  | ||||  |  |||| || || ||||| | ||||||||||||||||| ||||||||||    
T  5925352 tggagtacgcctccttcccgggatcacgctacacgtgtccttttccgcctcagatcacacgccgcataacccggagacggttatgccacgagcgcgccta 5925451  T
Q  352 tataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
     |||||||||||||||||||| ||||| || |||||||||||||    
T  5925452 cataagggtgaacttgcttcaccctcaaggaacacaacactttt 5925495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 160 - 421
Target Start/End: Original strand, 4781285 - 4781546
Alignment:
Q  160 gaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcac 259  Q
    ||||||||||| |||||||||||||||||| || |  ||||  ||| |  ||||  ||||||||| ||  ||||| |||  ||||||||  || ||||||    
T  4781285 gaccactcacatgactacacatgtacaatattacgatgcctcaaggctttgcaccaaaaggagcacgccgactcgactgtatcgtgccattctagagcac 4781384  T
Q  260 acctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataaggg 359  Q
     ||||| || |||||||||||||||  ||| || ||||||||||||||| || ||  |||||| |  || ||||||||||  || |||||||||||||||    
T  4781385 gcctccctgtcgggatcacgctacacgtgttcattcccgctcctaatcatacgccgtataatccgaggatggttatgccaagagtgcgcctatataaggg 4781484  T
Q  360 tgaacttgcttcaacctcagggtacacaacacttttaataactctcctaagccttttctctc 421  Q
    ||||||||||||| ||||| |||||||||||||||  | |||||||||||| ||||| ||||    
T  4781485 tgaacttgcttcaccctcaaggtacacaacactttacacaactctcctaagacttttatctc 4781546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 169 - 372
Target Start/End: Complemental strand, 1979360 - 1979156
Alignment:
Q  169 cacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttg 268  Q
    |||||||| || ||||||||||||||   || | ||| ||| |||||||||||||| || |||  || |||||||||| |||||||| ||||||||||||    
T  1979360 cacgactaaacgtgtacaataatatgcttccctaaggctacacactcaaaggagcacgccaacctgcgtgcgtcgtgcgacactggaccacacctccttg 1979261  T
Q  269 ccgggatcacgctacatttgtccactcccgctcct-aatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttg 367  Q
    ||||||||| ||||||| |||||  |||| ||||| ||||| || || ||||| | | ||||||||||||||| |||| |||||||||| ||||||||||    
T  1979260 ccgggatcatgctacatgtgtcctttcccactcctaaatcacacgccgcataacccgcagacggttatgccacgagcgtgcctatataaaggtgaacttg 1979161  T
Q  368 cttca 372  Q
    |||||    
T  1979160 cttca 1979156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 153 - 395
Target Start/End: Original strand, 12264903 - 12265145
Alignment:
Q  153 tgttctagaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacact 252  Q
    |||||| |||||||||||||||||||| |||||||||||| | |||||| ||| ||| ||||||| |||||| || |||| || |||| ||||   |||     
T  12264903 tgttctggaccactcacacgactacacgtgtacaataatacgccgccttcaggctacacactcaagggagcacgccaacttgcatgcgccgtgtaccaca 12265002  T
Q  253 ggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctat 352  Q
    ||||||| |||||||| ||||||||||||| || |||||   |||   |||||||| || || ||||| | ||||| ||||||||  | |||| ||||||    
T  12265003 ggagcacgcctccttgtcgggatcacgctatatgtgtccttccccatccctaatcatacgccgcataacccggagatggttatgcttcgagcgtgcctat 12265102  T
Q  353 ataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||||||||||||||| | ||||| ||||| || |||||||    
T  12265103 ataagggtgaacttgcttgaccctcaaggtacgcatcactttt 12265145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 154 - 395
Target Start/End: Complemental strand, 20034627 - 20034386
Alignment:
Q  154 gttctagaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactg 253  Q
    ||||||||||||||||||| | ||| |||| ||||| || |  | ||  ||| | |||||||||||||||| || || ||||||||| | ||||||| ||    
T  20034627 gttctagaccactcacacggcaacaaatgtgcaatattacgcagtctcaaggcttcgcactcaaaggagcacgccaattcgcctgcggcatgccacattg 20034528  T
Q  254 gagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctata 353  Q
    || ||  | ||| || |||||||||||||||  ||||||||||||||| |||||| |  || ||||| | ||||||||| ||||||  |||| |||||||    
T  20034527 gaccatgcttccctgtcgggatcacgctacacatgtccactcccgctcttaatcatatgccgcataacccggagacggtcatgccaagagcgggcctata 20034428  T
Q  354 taagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||||| |||||||| | ||||| ||||||||||||||||    
T  20034427 taagggtgtacttgctttaccctcaaggtacacaacactttt 20034386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 301
Target Start/End: Complemental strand, 20044910 - 20044763
Alignment:
Q  154 gttctagaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactg 253  Q
    ||||||||||||||||||| ||||| |||| ||||| || |  ||||  ||| | |||||||||||||||| || || ||||||||||||| ||||| ||    
T  20044910 gttctagaccactcacacggctacaaatgtgcaatattacgcagcctcaaggcttcgcactcaaaggagcacgccaattcgcctgcgtcgttccacattg 20044811  T
Q  254 gagcacacctccttgccgggatcacgctacatttgtccactcccgctc 301  Q
    |||||  ||||| || |||||||||||||||  |||||||||||||||    
T  20044810 gagcatgcctccctgtcgggatcacgctacacatgtccactcccgctc 20044763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 271 - 418
Target Start/End: Complemental strand, 23629240 - 23629093
Alignment:
Q  271 gggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgctt 370  Q
    ||||||||||||||  |||||||||||||||||||||| || || ||||| | |||||| |||||||||  || ||||||||||||| | ||  ||||||    
T  23629240 gggatcacgctacacgtgtccactcccgctcctaatcatacgccgcataacccggagacagttatgccaagagagcgcctatataagtgggacattgctt 23629141  T
Q  371 caacctcagggtacacaacacttttaataactctcctaagccttttct 418  Q
    || | ||| || |||||||| |||| | |||||| ||||| |||||||    
T  23629140 caccatcaaggcacacaacaattttcacaactcttctaagacttttct 23629093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 395
Target Start/End: Complemental strand, 17150196 - 17150031
Alignment:
Q  230 actcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagac 329  Q
    |||| |||||||||||||||||  |||||  ||||| | ||||||||| ||||||  |||||||||||| | ||||||| |  || ||||  |  |||||    
T  17150196 actctcctgcgtcgtgccacacaagagcaagcctccctaccgggatcatgctacacgtgtccactcccgtttctaatcatatgccgcatagccctgagac 17150097  T
Q  330 ggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    ||||| |||| |||| |||||||||| |||| ||||||||||| ||||| | ||| ||||| ||||    
T  17150096 ggttaagccaaaagcacgcctatataggggttaacttgcttcaccctcaagctacgcaacaatttt 17150031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 372
Target Start/End: Original strand, 16987018 - 16987089
Alignment:
Q  301 cctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttca 372  Q
    |||||||| ||||| ||||||| ||||||||||||| |  | ||||||||||||||||||||||||||||||    
T  16987018 cctaatcacacaccgcataatccggagacggttatggccaacgcgcgcctatataagggtgaacttgcttca 16987089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 23629354 - 23629288
Alignment:
Q  123 cataaaggcatcaatagcttggaggtcaactgttctagaccactcacacgactacacatgtacaata 189  Q
    ||||||| ||||||  ||||||  | |||||||||||||||||||||||||||||||||||||||||    
T  23629354 cataaagacatcaacggcttgggaggcaactgttctagaccactcacacgactacacatgtacaata 23629288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 395
Target Start/End: Original strand, 13292072 - 13292143
Alignment:
Q  324 ggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    ||||||||||||| |  | |||||||||||||| ||||||||||||||| ||||| |||||||| |||||||    
T  13292072 ggagacggttatggccaacgcgcgcctatataatggtgaacttgcttcaccctcaaggtacacatcactttt 13292143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 34854362 - 34854314
Alignment:
Q  347 gcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    ||||||||||||||||||||| |||| |||||| ||||||| |||||||    
T  34854362 gcctatataagggtgaacttgtttcaccctcagagtacacatcactttt 34854314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 161 - 421
Target Start/End: Complemental strand, 3591132 - 3590871
Alignment:
Q  161 accactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcaca 260  Q
    |||||||||||| |||| | ||||||||| || | |||||  ||||| | ||||||||||| || |  |||||||||||  ||| ||||||||||||||     
T  3591132 accactcacacggctactcgtgtacaatattacgccgcctcaaggtttcacactcaaaggaacacgacaactcgcctgcaccgtaccacactggagcacg 3591033  T
Q  261 cctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggt 360  Q
    ||||| ||| ||||||||||||||  ||||||||||||||| |||||| || || ||||| | ||||||||||||||||  || ||||||||||||||||    
T  3591032 cctccctgctgggatcacgctacacgtgtccactcccgctcataatcatacgccgcataacccggagacggttatgccaagagtgcgcctatataagggt 3590933  T
Q  361 gaacttgcttcaacctc-agggtacacaacacttttaataactctcctaagccttttctctc 421  Q
    |||||||||||| |||| | |||||||||||||||| | |||||||||||| ||||||||||    
T  3590932 gaacttgcttcaccctcaaaggtacacaacacttttcacaactctcctaagacttttctctc 3590871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 159 - 393
Target Start/End: Complemental strand, 48637846 - 48637612
Alignment:
Q  159 agaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagca 258  Q
    |||| ||||||||| ||| | ||||||||||||| | |||||| ||| ||| || | || ||||||  | |||| ||||||  |||| ||||| ||||||    
T  48637846 agacgactcacacggctaaatatgtacaataatacgccgccttaaggctacacatttaagggagcacaccaacttgcctgcaccgtgtcacaccggagca 48637747  T
Q  259 cacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagg 358  Q
    | |||||| | ||||||||||||||| |||||    |  ||||||||||| || || |||||   ||||||||||||||||| ||| |||||||||||||    
T  48637746 cgcctcctcgtcgggatcacgctacacttgtctttccatgctcctaatcacacgccgcataacacggagacggttatgccacgagcccgcctatataagg 48637647  T
Q  359 gtgaacttgcttcaacctcagggtacacaacactt 393  Q
    ||||||||| |||| ||||| ||||||||||||||    
T  48637646 gtgaacttgtttcaccctcaaggtacacaacactt 48637612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 198 - 401
Target Start/End: Original strand, 21098669 - 21098872
Alignment:
Q  198 ccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactccc 297  Q
    |||| ||||| | |||||||||||||| || ||| ||| || | ||||||||||||||| || ||||| |||| |||| | ||||||  ||||| ||       
T  21098669 ccttaaggtttcacactcaaaggagcacgctaacccgcttgtgccgtgccacactggagtacgcctccctgccaggattaggctacacgtgtccgcttta 21098768  T
Q  298 gctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttttaa 397  Q
     |||||||||| ||||| |||||    |||||||||||||||  ||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |    
T  21098769 actcctaatcatacaccgcataactcagagacggttatgccaagagcgcacctatataagggtgaacttgcttcaccctcaaggtacacaacacttttca 21098868  T
Q  398 taac 401  Q
    ||||    
T  21098869 taac 21098872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 393
Target Start/End: Original strand, 14254968 - 14255060
Alignment:
Q  301 cctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactt 393  Q
    |||||||| || || ||||| |||||||  |||||| |  ||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  14254968 cctaatcatacgccgcataacctggagaaagttatgaccaaagcgtgcctatataagggtgaacttgtttcaccctcaaggtacacaacactt 14255060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 395
Target Start/End: Complemental strand, 25408403 - 25408167
Alignment:
Q  159 agaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagca 258  Q
    ||||||||||||||| ||||| || || |||||| | |||| | ||| |||| ||| || |||||| || | || ||||||  |||||||||  ||||||    
T  25408403 agaccactcacacgattacacgtggactataatacgccgccctaaggctacgtacttaagggagcacgccagcttgcctgcaccgtgccacagaggagca 25408304  T
Q  259 cacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagg 358  Q
    | |||||| ||  |||||| ||||||  |||||   |||||| ||||||| || ||  |||| | |||||| ||||||    || | |||||||  ||||    
T  25408303 cgcctcctcgcaaggatcatgctacacatgtccttccccgcttctaatcacacgccttataacccggagacagttatgaacaaaacacgcctatgaaagg 25408204  T
Q  359 gtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||||||||||| ||||| || ||||| |||||||    
T  25408203 gtgaacttgcttcaccctcaagggacacatcactttt 25408167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 395
Target Start/End: Original strand, 23728761 - 23728840
Alignment:
Q  316 cataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||| || ||||||||||| |  | | ||||||||||||||||||||||| |||| ||||| |||||||| |||||||    
T  23728761 cataatttgaagacggttatggccaacgtgcgcctatataagggtgaacttgtttcaccctcaaggtacacatcactttt 23728840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 4601455 - 4601499
Alignment:
Q  343 gcgcgcctatataagggtgaacttgcttcaacctcagggtacaca 387  Q
    |||||| ||||||||||||||||||||||| ||||| || |||||    
T  4601455 gcgcgcgtatataagggtgaacttgcttcaccctcaagggacaca 4601499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 150 - 393
Target Start/End: Complemental strand, 17397039 - 17396796
Alignment:
Q  150 aactgttctagaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccac 249  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||  |||| ||||||| ||||| |||||  ||||||||    
T  17397039 aactgttctagaccactcacacgactacacatgtacaataatacgtcgccttcaggctacgcaccaaaagaagcatgccaactcacctgcaccgtgccac 17396940  T
Q  250 actggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcc 349  Q
    ||   ||||| |||||||||||||||||| |||||| |||||   |||||||||||||| || || ||||| | | | | ||||| ||||| || ||| |    
T  17396939 accaaagcacgcctccttgccgggatcacactacatgtgtccttccccgctcctaatcatacgccgcataacccgaaaatggttacgccacgagtgcgtc 17396840  T
Q  350 tatataagggtgaacttgcttcaacctcagggtacacaacactt 393  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||||    
T  17396839 tatataagggtgaacatgcttcaccctcaaggtacacaacactt 17396796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 160 - 394
Target Start/End: Original strand, 20118762 - 20118996
Alignment:
Q  160 gaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcac 259  Q
    ||||||||||||| |||||  |||||||||||| | |||||| ||| ||| |||| ||||||||| || |||  ||||||  |  |||||||  ||||||    
T  20118762 gaccactcacacggctacatgtgtacaataatacgccgccttaaggctacacacttaaaggagcacgccaacatgcctgcaccaagccacaccagagcac 20118861  T
Q  260 acctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataaggg 359  Q
     |||| ||| |||||||||||||||| |||||  ||||||||||||||| || ||  |||| || ||||||||||||||| |||||||||||||||||||    
T  20118862 gcctcattgtcgggatcacgctacatatgtcctttcccgctcctaatcatacgccgaataacctagagacggttatgccataagcgcgcctatataaggg 20118961  T
Q  360 tgaacttgcttcaacctcagggtacacaacacttt 394  Q
    ||||||||||||| ||||| ||||||||| |||||    
T  20118962 tgaacttgcttcaccctcaaggtacacaatacttt 20118996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 116 - 394
Target Start/End: Original strand, 20122521 - 20122798
Alignment:
Q  116 attgatccataaaggcatcaatagcttggaggtcaactgttctagaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactc 215  Q
    ||||| |||||||| ||||||| ||||  |||  ||||||||| | |||||||||||  ||||| | || ||||||| |  ||||| ||| |||||||||    
T  20122521 attgagccataaagacatcaatggctta-agggaaactgttctgggccactcacacggatacacttatataataatacgctgccttaaggctacgcactc 20122619  T
Q  216 aaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacacca 315  Q
    |||| ||| ||| |||  |||| |  ||||||||||  |||||| || | ||| ||||||||| |||||| |||||   || |||| |||||| || ||     
T  20122620 aaagtagcgtgccaacatgcctccaccgtgccacaccagagcacgccccattgtcgggatcacactacatgtgtccttcccggctcttaatcatacgccg 20122719  T
Q  316 cataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttt 394  Q
    ||||| | |||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  20122720 cataacccggagacggttattccataagcgcgcctatataagggtgaactttcttcaccctcaaggtacacaacacttt 20122798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 395
Target Start/End: Original strand, 14860025 - 14860119
Alignment:
Q  301 cctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||||| || || ||||| ||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  14860025 cctaatcatacgcctcataacctggagacggttatgacttaagcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcactttt 14860119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 383
Target Start/End: Complemental strand, 16704525 - 16704485
Alignment:
Q  343 gcgcgcctatataagggtgaacttgcttcaacctcagggta 383  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  16704525 gcgcgcctatataagggtgaacttgcttcaccctcaaggta 16704485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 395
Target Start/End: Complemental strand, 25496104 - 25496009
Alignment:
Q  300 tcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    ||||||||| || || ||||| | |||||||||||||    | | |||||||||||||||||||||||||||| | | | |||||||| |||||||    
T  25496104 tcctaatcacacgccgcataacccggagacggttatgatcaacgtgcgcctatataagggtgaacttgcttcacctttaaggtacacatcactttt 25496009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 378
Target Start/End: Complemental strand, 1770991 - 1770914
Alignment:
Q  301 cctaatcaaacaccacataatctggagacggttatgccacaa-gcgcgcctatataagggtgaacttgcttcaacctca 378  Q
    |||||||| || || ||||||  |||||||||||||| |||| |||| |||||||||||| |||||||||||| |||||    
T  1770991 cctaatcatacgccgcataattcggagacggttatgc-acaacgcgcacctatataagggcgaacttgcttcatcctca 1770914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 385
Target Start/End: Complemental strand, 12108538 - 12108500
Alignment:
Q  347 gcctatataagggtgaacttgcttcaacctcagggtaca 385  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  12108538 gcctatataagggtgaacttgcttcaccctcaaggtaca 12108500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 12731536 - 12731581
Alignment:
Q  350 tatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    ||||||||||||||||||||||| ||||| ||| |||| |||||||    
T  12731536 tatataagggtgaacttgcttcaccctcaaggttcacatcactttt 12731581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 163 - 395
Target Start/End: Original strand, 1638106 - 1638338
Alignment:
Q  163 cactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacc 262  Q
    |||||||||| |||||| ||||||||||||||||||||| ||| |||| ||||||||||||| || |||  | ||||  ||||||||||  |||||| ||    
T  1638106 cactcacacggctacacgtgtacaataatatgtcgccttaaggctacgtactcaaaggagcacgccaacatggctgcaccgtgccacaccagagcacgcc 1638205  T
Q  263 tccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtga 362  Q
    || ||||| |||||||||||||  |||||   |||||||||||||| |  || ||||| | ||||||||||||||||| ||||| |||||||||||||||    
T  1638206 tcattgccaggatcacgctacacgtgtccttccccgctcctaatcatatgccgcataacccggagacggttatgccacgagcgcacctatataagggtga 1638305  T
Q  363 acttgcttcaacctcagggtacacaacactttt 395  Q
    |||||||||| ||||| ||||||||||||||||    
T  1638306 acttgcttcaccctcaaggtacacaacactttt 1638338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 161 - 395
Target Start/End: Complemental strand, 18464105 - 18463871
Alignment:
Q  161 accactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcaca 260  Q
    |||||||||| | |||||  |||||||||||| |||||||| ||| ||| |||||||||||||| || |||  |||||| |||||||||||||||||||     
T  18464105 accactcacaaggctacatgtgtacaataatacgtcgccttaaggctacacactcaaaggagcacgccaacatgcctgcatcgtgccacactggagcacg 18464006  T
Q  261 cctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggt 360  Q
    |||| ||| ||||||||||||| || ||| |  ||||| ||||||||| || || ||||| | ||||||||||||||||||||||||||||||||||| |    
T  18464005 cctcattgtcgggatcacgctaaatgtgttctttcccgatcctaatcatacgccgcataacccggagacggttatgccacaagcgcgcctatataaggat 18463906  T
Q  361 gaacttgcttcaacctcagggtacacaacactttt 395  Q
    ||| ||| |||| ||||| | ||||||||||||||    
T  18463905 gaaattgtttcaccctcaagatacacaacactttt 18463871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 153 - 421
Target Start/End: Complemental strand, 19564274 - 19564006
Alignment:
Q  153 tgttctagaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacact 252  Q
    |||| ||||||||||||||| |||||| ||||||||| || | | |||  ||| | |||||||||||| |||  | |||||||||||  |||||||||||    
T  19564274 tgttttagaccactcacacggctacacgtgtacaatattacgccacctcaaggcttcgcactcaaaggggcacaccaactcgcctgcaccgtgccacact 19564175  T
Q  253 ggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctat 352  Q
    ||||||| |||||  | ||||||||| |||||  |||||||||||||||||||||| |  ||  ||||||| |||||||||||||||  ||  | |||||    
T  19564174 ggagcacgcctccccgtcgggatcacactacacgtgtccactcccgctcctaatcatatgccgtataatctagagacggttatgccaagagtacacctat 19564075  T
Q  353 ataagggtgaacttgcttcaacctcagggtacacaacacttttaataactctcctaagccttttctctc 421  Q
    |||| ||||||||||||||| ||||| |||||||||||||||| | ||| |||||||| ||||| ||||    
T  19564074 ataacggtgaacttgcttcaccctcaaggtacacaacacttttcacaaccctcctaagacttttatctc 19564006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 152 - 395
Target Start/End: Complemental strand, 25066458 - 25066215
Alignment:
Q  152 ctgttctagaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacac 251  Q
    ||||||| ||||||||||| | |||||| ||| ||||| || |||||||| ||| ||| |||| || ||| ||  | |||  ||| ||| | ||| |||     
T  25066458 ctgttctggaccactcacatggctacacgtgtgcaatattacgtcgccttaaggctacacacttaatggaacactccaacaagcccgcgccctgctacat 25066359  T
Q  252 tggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgccta 351  Q
    ||||||||||||| ||| ||||||| |||||||  |||||   || ||||||| ||| || || ||||| |  |||||||||||||||||||||||||||    
T  25066358 tggagcacacctcgttgacgggatcgcgctacacatgtccttcccggctcctagtcatacgccgcataacccagagacggttatgccacaagcgcgccta 25066259  T
Q  352 tataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||    
T  25066258 tataagggtaaacttgcttcaacctcaaggtacacaacactttt 25066215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 243 - 421
Target Start/End: Complemental strand, 12415658 - 12415480
Alignment:
Q  243 gtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaa 342  Q
    |||||||||||||||||  |||| |||| |||||||||||||  |||||||| | | ||||||| | || || |||||||||||||||||||| |||  |    
T  12415658 gtgccacactggagcacgtctccctgccaggatcacgctacacatgtccacttctgttcctaattatacgccgcataatctggagacggttattccaaga 12415559  T
Q  343 gcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttttaataactctcctaagccttttctctc 421  Q
     |||| |||||||||||||||||| ||| | |||||  ||||||||||||||| | |||||||||||| ||| ||||||    
T  12415558 tcgcgtctatataagggtgaacttactttaccctcaaagtacacaacactttttacaactctcctaagacttctctctc 12415480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 229 - 421
Target Start/End: Complemental strand, 17110934 - 17110742
Alignment:
Q  229 aactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggaga 328  Q
    ||||||||| |||| ||||||| |||||||| |||||||| |||||||||| ||||| ||| ||||| |||||||||||| |  || |||||     |||    
T  17110934 aactcgcctacgtcatgccacattggagcacgcctccttgtcgggatcacggtacatgtgttcactctcgctcctaatcatatgccgcataa--cacaga 17110837  T
Q  329 cggttatgcca--caagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttttaataactctcctaagccttttctctc 421  Q
    |||||||||||    ||||||||||| ||||||||||||||||||| ||||| | ||||||| ||||||   ||| || ||||| ||||||||||    
T  17110836 cggttatgccaagagagcgcgcctatgtaagggtgaacttgcttcaccctcaagatacacaatacttttcgcaacacttctaagacttttctctc 17110742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 394
Target Start/End: Complemental strand, 5518708 - 5518612
Alignment:
Q  298 gctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttt 394  Q
    ||||||||||| || ||  |||| | |||||||||||||||  |  ||||||||||||||||||||||||||||| ||||| ||||| || ||||||    
T  5518708 gctcctaatcatacgccttataacccggagacggttatgcccaacacgcgcctatataagggtgaacttgcttcaccctcaaggtacgcatcacttt 5518612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 394
Target Start/End: Original strand, 15514533 - 15514580
Alignment:
Q  347 gcctatataagggtgaacttgcttcaacctcagggtacacaacacttt 394  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  15514533 gcctatataagggtgaacttgcttcaccctcaaggtacacatcacttt 15514580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 395
Target Start/End: Original strand, 14601989 - 14602035
Alignment:
Q  349 ctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  14601989 ctatataaggatgaacttgcttcaccctcaaggtacacaacactttt 14602035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 395
Target Start/End: Original strand, 15742081 - 15742173
Alignment:
Q  303 taatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||| || || ||||| | ||||||||||||| |  |  |||||||||||||||||||| ||||||||  |||| |||||||| |||||||    
T  15742081 taatcacacgccgcataacccggagacggttatggccaacacgcgcctatataagggtgaatttgcttcagtctcaaggtacacatcactttt 15742173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 2674500 - 2674582
Alignment:
Q  301 cctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggta 383  Q
    |||||||| || || || |||| ||||||||||||||   | |||||| ||||||||||||||||| ||||| ||||| ||||    
T  2674500 cctaatcacacgccgcaaaatccggagacggttatgctcaacgcgcgcttatataagggtgaacttacttcatcctcaaggta 2674582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 372
Target Start/End: Original strand, 16012440 - 16012469
Alignment:
Q  343 gcgcgcctatataagggtgaacttgcttca 372  Q
    ||||||||||||||||||||||||||||||    
T  16012440 gcgcgcctatataagggtgaacttgcttca 16012469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 12683927 - 12683879
Alignment:
Q  324 ggagacggttatgccacaagcgcgcctatataagggtgaacttgcttca 372  Q
    ||||||||||||||   | ||||||||| ||||||||||||||||||||    
T  12683927 ggagacggttatgcttaatgcgcgcctagataagggtgaacttgcttca 12683879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 421
Target Start/End: Complemental strand, 18800238 - 18799824
Alignment:
Q  7 ccacactctatccgggcaggcttcagttcacgacaaaa-gcatcgtgggacaccggactaagccgtccacgagcgcttttgatcaaaagcctcctttttc 105  Q
    ||||||||| | ||||| |||||||||||  |||| || |||||| ||| | |||||||||| |||  |||||||| |||||||||   ||||||| ||     
T  18800238 ccacactctttgcgggcgggcttcagttcttgacacaacgcatcgagggccgccggactaagtcgttgacgagcgcctttgatcaagtacctccttctt- 18800140  T
Q  106 tgctaaatttattgatccataaaggcatcaatagcttggaggtcaactgttctagaccactcacacgactacacatgtacaataatatgtcgccttgagg 205  Q
    ||||||||  |||||  ||||||| ||||||| |||||| ||  ||||||| | ||||||||||| | || ||| ||||||||| || | | |||  |||    
T  18800139 tgctaaatccattgagtcataaagacatcaatggcttggggggaaactgttatggaccactcacatggctgcacgtgtacaatattacgccacctcaagg 18800040  T
Q  206 ttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaa 305  Q
     | | |||| ||| ||||| || |||||||||||||| ||||||| |||||||  | ||| || |  ||| | ||||||| ||| ||||| |||||||||    
T  18800039 cttcacacttaaaagagcacgccaactcgcctgcgtcatgccacattggagcatgcttccctgtcaagattatgctacatgtgttcactctcgctcctaa 18799940  T
Q  306 tcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttttaataactctc 405  Q
    ||| || |||||||| |  |||||||||||||| | ||||||||||||||||||||||||||||||| | ||| |||||||||||||||| | |||||||    
T  18799939 tcacacgccacataacccagagacggttatgcctcgagcgcgcctatataagggtgaacttgcttcatcatcaaggtacacaacacttttcacaactctc 18799840  T
Q  406 ctaagccttttctctc 421  Q
    |||   ||||||||||    
T  18799839 ctagaacttttctctc 18799824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 210 - 408
Target Start/End: Original strand, 25679081 - 25679279
Alignment:
Q  210 gcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaa 309  Q
    ||||||||||| |||||| ||||||| || | | ||||||||| |||||| ||||  | |||||||||||||| |  |||||||||| |||||||||||     
T  25679081 gcactcaaaggggcatgccaactcgcatgtgccatgccacactagagcacgcctcactaccgggatcacgctaaacgtgtccactcctgctcctaatcat 25679180  T
Q  310 acaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttttaataactctccta 408  Q
    || || ||||| | | ||||||||||||||  ||||| ||||||||||||||||||||||||| ||||| | || ||||||||||| | ||||||||||    
T  25679181 actccgcataacccgaagacggttatgccaagagcgcacctatataagggtgaacttgcttcaccctcaagctagacaacacttttcacaactctccta 25679279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 209 - 395
Target Start/End: Complemental strand, 21213500 - 21213314
Alignment:
Q  209 cgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatca 308  Q
    |||||||| ||||| | || ||||||||||| | |||||||||| |||||  ||||  | ||||||||||||||||  |||||||| ||||||||||||     
T  21213500 cgcactcagaggagtacgccaactcgcctgcattgtgccacacttgagcatgcctctcttccgggatcacgctacacgtgtccacttccgctcctaatcg 21213401  T
Q  309 aacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
      | ||  |||| | |||||||||||| |||  ||||||||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  21213400 ttcgccgtataaccaggagacggttataccaagagcgcgcctatataagggtgaacttgcttcaccctcaagctacacaacactttt 21213314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 211 - 405
Target Start/End: Complemental strand, 18804172 - 18803978
Alignment:
Q  211 cactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaa 310  Q
    ||||||| |||||| || |||||||| | | |||||||||||||||||| |||||||| | |||||||| ||||| |||||||||||||||||||||| |    
T  18804172 cactcaagggagcacgccaactcgcccgtgccgtgccacactggagcacgcctccttgtcaggatcacgttacatgtgtccactcccgctcctaatcaca 18804073  T
Q  311 caccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttttaataactctc 405  Q
    |  |  ||||    |||| |  | |||||||| | |||||||||| ||||||| |||||||| ||||| ||||||||||| |||| | |||||||    
T  18804072 cgtcgtataactcagagatgaatctgccacaaacacgcctatatacgggtgaaattgcttcaccctcaaggtacacaacaattttcacaactctc 18803978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 237 - 393
Target Start/End: Original strand, 26347953 - 26348109
Alignment:
Q  237 tgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatg 336  Q
    ||||||||||||||| ||||||| |||||| || |||||||||| |||  ||| |   |||||| ||||||| ||  | ||||| | ||||||| |||||    
T  26347953 tgcgtcgtgccacacaggagcacgcctcctcgctgggatcacgcaacacgtgttcttccccgcttctaatcacacgtcgcataacccggagacgtttatg 26348052  T
Q  337 ccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactt 393  Q
      | |   |||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  26348053 gaaaacatgcgcctatataagggtgaacttgcttcaccctcaaggtacacaacactt 26348109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 395
Target Start/End: Complemental strand, 22865911 - 22865832
Alignment:
Q  316 cataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    ||||||| ||| ||||||||| |  | || ||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  22865911 cataatccggaaacggttatggccaacgcacgcctatataagggtgaacttgcttcaccctcaaggtacacatcactttt 22865832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 25537570 - 25537476
Alignment:
Q  301 cctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||||| ||  ||||||| |||||||||||| || |  | |||||||||||||||||||||||| ||||| ||||| |||| ||| |||||||    
T  25537570 cctaatcacacgtcacataacctggagacggttttggccaaggcgcgcctatataagggtgaactttcttcaccctcaaggtatacatcactttt 25537476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 385
Target Start/End: Original strand, 31202301 - 31202385
Alignment:
Q  301 cctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtaca 385  Q
    |||||||| || || ||||| || |||||||||||| |  | | |||||||||||||||||||||||||||| ||||| ||||||    
T  31202301 cctaatcacacgccgcataacctagagacggttatgaccaacgtgcgcctatataagggtgaacttgcttcaccctcaaggtaca 31202385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 24647414 - 24647359
Alignment:
Q  340 caagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    ||||||||||||||||||||||||||||||||| ||| | |||| ||| |||||||    
T  24647414 caagcgcgcctatataagggtgaacttgcttcacccttaaggtatacatcactttt 24647359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 394
Target Start/End: Complemental strand, 24546507 - 24546413
Alignment:
Q  301 cctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaac-ttgcttcaacctcagggtacacaacacttt 394  Q
    |||||||| || || ||||| | ||||||||||||| |  | |||||||||||||||||||||| |||||||| | ||| |||||||| ||||||    
T  24546507 cctaatcacacgccgcataacccggagacggttatggctaacgcgcgcctatataagggtgaactttgcttcaccttcaaggtacacatcacttt 24546413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 211 - 419
Target Start/End: Complemental strand, 24319167 - 24318959
Alignment:
Q  211 cactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaa 310  Q
    |||||||| ||| | || |||||||||||| ||||||||||| |||||||||||| | ||||||||||| | ||  |||||||||| | ||||||||| |    
T  24319167 cactcaaatgagtacgccaactcgcctgcgccgtgccacactagagcacacctccctaccgggatcacgtttcacgtgtccactccagttcctaatcata 24319068  T
Q  311 caccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttttaataactctcctaag 410  Q
    |    ||||| |  |||||||||||||||  ||||||||||||||||||||||||||||||| |||||  ||||||||||||||| | ||||||||||||    
T  24319067 cgttgcataacccagagacggttatgccaagagcgcgcctatataagggtgaacttgcttcaccctcaatgtacacaacacttttcacaactctcctaag 24318968  T
Q  411 ccttttctc 419  Q
     ||||||||    
T  24318967 acttttctc 24318959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 211 - 368
Target Start/End: Original strand, 28425975 - 28426132
Alignment:
Q  211 cactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaa 310  Q
    |||||||||| ||| || |||| |||||||||||||||||| | ||||||||||| ||||||||||| ||||||  |||||||||| ||||||||||| |    
T  28425975 cactcaaaggggcacgccaacttgcctgcgtcgtgccacaccgaagcacacctccctgccgggatcatgctacacatgtccactcctgctcctaatcata 28426074  T
Q  311 caccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgc 368  Q
      |||||||| | |||||||||||| ||   |||||||||||||||||||||||||||    
T  28426075 tgccacataacccggagacggttatacctagagcgcgcctatataagggtgaacttgc 28426132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 175 - 395
Target Start/End: Original strand, 24157106 - 24157326
Alignment:
Q  175 tacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccggga 274  Q
    ||||| |||||||||||| | |||||| ||| ||| ||||||| |||| |  | |||   |||||  |||||||||| ||||||| |||||| || ||||    
T  24157106 tacacgtgtacaataatacgccgccttaaggctacacactcaagggagtacacaaacctacctgcaccgtgccacacaggagcacgcctcctcgctggga 24157205  T
Q  275 tcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaac 374  Q
    ||||||||||  |||||   |||||||||||||| | ||| ||||| | |||||| |||| | |  |  ||||| ||||||||||||||||||||||| |    
T  24157206 tcacgctacacatgtccttccccgctcctaatcacataccgcataacccggagacagttagggccaacacgcgcttatataagggtgaacttgcttcacc 24157305  T
Q  375 ctcagggtacacaacactttt 395  Q
    |||| ||||||||| ||||||    
T  24157306 ctcaaggtacacaatactttt 24157326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 187 - 395
Target Start/End: Complemental strand, 29711295 - 29711087
Alignment:
Q  187 ataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatt 286  Q
    |||||| | |||||| ||| ||| |||||||  ||||| || |||| | ||||  ||||||| || ||||||  |||||| || ||||||||||||||      
T  29711295 ataatacgccgccttaaggctactcactcaagagagcacgccaacttgtctgcaccgtgccatacaggagcatgcctcctcgcagggatcacgctacacg 29711196  T
Q  287 tgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacac 386  Q
    | |||   |||||||||||||| |  || |||||   ||||||||||| |||  | |||||||||||||||||||||||||||||| ||||| |||||||    
T  29711195 tatccttccccgctcctaatcacatgccgcataacacggagacggttaagcccaatgcgcgcctatataagggtgaacttgcttcaccctcaaggtacac 29711096  T
Q  387 aacactttt 395  Q
    | |||||||    
T  29711095 atcactttt 29711087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 395
Target Start/End: Original strand, 15390511 - 15390605
Alignment:
Q  301 cctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||||| ||| | ||||| | || |||||||||| |  | |||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  15390511 cctaatcacacatcgcataacccggggacggttatggcctacgcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcactttt 15390605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 19290609 - 19290546
Alignment:
Q  324 ggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacaca 387  Q
    ||||||||||||| | |||||||  |||||||||||||||||||||||| ||| | ||||||||    
T  19290609 ggagacggttatgacccaagcgcatctatataagggtgaacttgcttcacccttaaggtacaca 19290546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 15825294 - 15825233
Alignment:
Q  326 agacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacaca 387  Q
    ||||||||||| |  | ||||||||||| |||||||||||||||||| ||||| ||||||||    
T  15825294 agacggttatgaccaacgcgcgcctatacaagggtgaacttgcttcaccctcaaggtacaca 15825233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 383
Target Start/End: Complemental strand, 3586486 - 3586446
Alignment:
Q  343 gcgcgcctatataagggtgaacttgcttcaacctcagggta 383  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  3586486 gcgcgcctatataagggtgaacttgcttcaccctcaaggta 3586446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 19050407 - 19050455
Alignment:
Q  347 gcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||||||||||||||||| |||||  ||||||||||||| |||||||    
T  19050407 gcctatataagggtgaacttacttcactctcagggtacacatcactttt 19050455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 152 - 402
Target Start/End: Original strand, 4722 - 4975
Alignment:
Q  152 ctgttctagaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacac 251  Q
    ||||||||||||||||||||| |||||| |||| ||||||| |  ||||| ||  | | || ||||||||||| || |||  ||||||| |||||||||     
T  4722 ctgttctagaccactcacacggctacacgtgtataataatacgctgccttaagacttcccattcaaaggagcacgccaacatgcctgcgccgtgccacat 4821  T
Q  252 tggagcacacctccttg---ccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgc 348  Q
    |||||||||||||||||   ||||| ||||||||||  |||||||||||||| ||||||| |  || |||||   ||||||  ||||||||||||||  |    
T  4822 tggagcacacctccttgttgccgggttcacgctacacgtgtccactcccgcttctaatcacatgccgcataaatcggagacaattatgccacaagcgaac 4921  T
Q  349 ctatataagggtgaacttgcttcaacctcagggtacacaacacttttaataact 402  Q
    ||||||||| ||||| |||||||| ||||| |||||||||||||||| ||||||    
T  4922 ctatataagagtgaatttgcttcatcctcatggtacacaacacttttcataact 4975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 152 - 402
Target Start/End: Original strand, 6268 - 6521
Alignment:
Q  152 ctgttctagaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacac 251  Q
    ||||||||||||||||||||| |||||| |||| ||||||| |  ||||| ||  | | || ||||||||||| || |||  ||||||| |||||||||     
T  6268 ctgttctagaccactcacacggctacacgtgtataataatacgctgccttaagacttcccattcaaaggagcacgccaacatgcctgcgccgtgccacat 6367  T
Q  252 tggagcacacctccttg---ccgggatcacgctacatttgtccactcccgctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgc 348  Q
    |||||||||||||||||   ||||| ||||||||||  |||||||||||||| ||||||| |  || |||||   ||||||  ||||||||||||||  |    
T  6368 tggagcacacctccttgttgccgggttcacgctacacgtgtccactcccgcttctaatcacatgccgcataaatcggagacaattatgccacaagcgaac 6467  T
Q  349 ctatataagggtgaacttgcttcaacctcagggtacacaacacttttaataact 402  Q
    ||||||||| ||||| |||||||| ||||| |||||||||||||||| ||||||    
T  6468 ctatataagagtgaatttgcttcatcctcatggtacacaacacttttcataact 6521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 211 - 395
Target Start/End: Complemental strand, 42503 - 42319
Alignment:
Q  211 cactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaa 310  Q
    ||||||||||| || || |||||||||| ||||||||||||||||| || ||||| ||||  ||| ||||||||  ||||| |||   |||||||||| |    
T  42503 cactcaaaggaacacgctaactcgcctgtgtcgtgccacactggagtacgcctccctgccatgattacgctacacgtgtccgctctaactcctaatcata 42404  T
Q  311 caccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||| |||||    |||||||||||||||  |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  42403 caccgcataactcagagacggttatgccaagagcgggcctatataagggtgaacttgcttcaccctcaaggtacacaacactttt 42319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 284
Target Start/End: Original strand, 4237 - 4362
Alignment:
Q  159 agaccactcacacgactacacatgtacaataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagca 258  Q
    ||||||||||||  ||  ||| |||||||||||| |||||||| ||| ||| ||||||| |||||| || ||||  ||| | ||||||||||| ||||||    
T  4237 agaccactcacataacaccacgtgtacaataatacgtcgccttaaggctacacactcaagggagcacgccaacttacctacatcgtgccacacaggagca 4336  T
Q  259 cacctccttgccgggatcacgctaca 284  Q
    | ||||||||| ||||||||||||||    
T  4337 cgcctccttgctgggatcacgctaca 4362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 4396 - 4450
Alignment:
Q  347 gcctatataagggtgaacttgcttcaacctcagggtacacaacacttttaataac 401  Q
    |||||||||||||||||||||||||| ||||| |||||||| || |||| |||||    
T  4396 gcctatataagggtgaacttgcttcaccctcaaggtacacatcatttttcataac 4450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 401
Target Start/End: Complemental strand, 41064 - 40861
Alignment:
Q  198 ccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactccc 297  Q
    |||| ||| ||| ||||||| |||||| || ||||  |||||  |||||| |||  |||||| |||||| || ||||||||||||||  ||||    |||    
T  41064 ccttaaggctacacactcaagggagcacgccaactttcctgcaccgtgccgcacaagagcacgcctcctcgcagggatcacgctacacatgtcgttcccc 40965  T
Q  298 gctcctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttttaa 397  Q
    | || |||||| |  || ||||| | ||||||||||||| |    || |||||||| |||||||||||||||||| ||||| |||||||| ||||||| |    
T  40964 gttcttaatcacatgccgcataacccggagacggttatgaccagcgcacgcctataaaagggtgaacttgcttcaccctcaaggtacacatcacttttca 40865  T
Q  398 taac 401  Q
    ||||    
T  40864 taac 40861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 395
Target Start/End: Original strand, 6786 - 6880
Alignment:
Q  301 cctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||||| || || ||||| ||||||||||||||| |  | | ||||||||| ||||||||||||| |||| ||||| |||||||| |||||||    
T  6786 cctaatcacacgccgcataacctggagacggttatggccaacgtgcgcctatacaagggtgaacttgtttcaccctcaaggtacacatcactttt 6880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 395
Target Start/End: Original strand, 120977 - 121031
Alignment:
Q  341 aagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||    
T  120977 aagcgcgcctatataagggtgaatttgcttcaccctcaaggtacacatcactttt 121031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 379837 - 379787
Alignment:
Q  345 gcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    ||||||||||| |||||||||||||||| ||||| |||||||| |||||||    
T  379837 gcgcctatatacgggtgaacttgcttcaccctcaaggtacacatcactttt 379787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 23051 - 22957
Alignment:
Q  301 cctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||||| ||||| ||||| ||||||| ||||||  |  | |||| |||| |||||||||||||||||||| ||||| |||||||  |||||||    
T  23051 cctaatcacacaccgcataacctggagagggttatcaccaacgcgcacctacataagggtgaacttgcttcaccctcaaggtacacgtcactttt 22957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 215389 - 215343
Alignment:
Q  349 ctatataagggtgaacttgcttcaacctcagggtacacaacactttt 395  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  215389 ctatataaggatgaacttgcttcaccctcaaggtacacaacactttt 215343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 385
Target Start/End: Original strand, 168 - 252
Alignment:
Q  301 cctaatcaaacaccacataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtaca 385  Q
    |||||||| ||||  ||||| | |||||| |||||| |  | ||||||||| |||||||||||||||||||| ||||| ||||||    
T  168 cctaatcacacactgcataacccggagacagttatgaccaacgcgcgcctagataagggtgaacttgcttcaccctcaaggtaca 252  T

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Target: scaffold0092 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 284
Target Start/End: Original strand, 21430 - 21527
Alignment:
Q  187 ataatatgtcgccttgaggttacgcactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctaca 284  Q
    |||||| | |||||| ||| ||| |||| || |||||| || |||| || ||| |||||||||||  |||||| |||||| || ||||||||||||||    
T  21430 ataatacgccgccttaaggctacacacttaagggagcacgccaacttgcatgcatcgtgccacacatgagcacgcctcctcgcagggatcacgctaca 21527  T

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