View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2220_low_17 (Length: 417)

Name: NF2220_low_17
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2220_low_17
NF2220_low_17
[»] chr7 (2 HSPs)
chr7 (17-405)||(33353378-33353765)
chr7 (350-381)||(1083880-1083911)
[»] chr5 (2 HSPs)
chr5 (353-404)||(26516181-26516233)
chr5 (353-405)||(32172536-32172589)
[»] chr8 (3 HSPs)
chr8 (353-404)||(2107461-2107513)
chr8 (353-402)||(26499596-26499646)
chr8 (353-405)||(7008512-7008565)
[»] chr6 (1 HSPs)
chr6 (353-381)||(3181230-3181258)
[»] chr3 (1 HSPs)
chr3 (353-381)||(49772829-49772857)
[»] chr1 (1 HSPs)
chr1 (353-404)||(48133074-48133126)


Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 33353378 - 33353765
Alignment:
Q  17 caacaactgcatctatcaaaccaacatacggttcgataactaaaggccggcccgaaataatgataaccacacacttcatagctccacaaacatttgttat 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33353378 caacaactgcatctatcaaaccaacatacggttcaataactaaaggccggcccgaaataatgataaccacacacttcatagctccacaaacatttgttat 33353477  T
Q  117 gatctcaggaccagggtttgggattgtcaagttcatattgtcaccatgcatttcagcataaggatgctctcctactactactatagcatagcaaaattca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33353478 gatctcaggaccagggtttgggattgtcaagttcatattgtcaccatgcatttcagcataaggatgctctcctactactactatagcatagcaaaattca 33353577  T
Q  217 ttggattcaagaaattctttatcagggttctccttgtagatcactgtggtctcaggatcaacagtgtttttcacagcattgagaattgtagtccctgatc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33353578 ttggattcaagaaattctttatcagggttctccttgtagatcactgtggtctcaggatcaacagtgtttttcacagcattgagaattgtagtccctgatc 33353677  T
Q  317 atatgaagtatacaatattaacaagagtagcaaccatttgaataaacaacttaattaagcgcttaagcatatgcgcttatcatataaga 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33353678 atatgaagtatacaatattaacaagagtagcaaccatttgaataaacaacttaattaagcgc-taagcatatgcgcttatcatataaga 33353765  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 381
Target Start/End: Complemental strand, 1083911 - 1083880
Alignment:
Q  350 ccatttgaataaacaacttaattaagcgctta 381  Q
    ||||||||||||||||||||||||||||||||    
T  1083911 ccatttgaataaacaacttaattaagcgctta 1083880  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 26516181 - 26516233
Alignment:
Q  353 tttgaataaacaacttaattaagcgctta-agcatatgcgcttatcatataag 404  Q
    |||| |||||||||||||||||||||||| |||||| ||||||||||||||||    
T  26516181 tttggataaacaacttaattaagcgcttatagcataagcgcttatcatataag 26516233  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 405
Target Start/End: Original strand, 32172536 - 32172589
Alignment:
Q  353 tttgaataaacaacttaattaagcgctta-agcatatgcgcttatcatataaga 405  Q
    |||| ||||||||| |||||||||||||| |||||| |||||||||||| ||||    
T  32172536 tttggataaacaacataattaagcgcttacagcataagcgcttatcatacaaga 32172589  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 404
Target Start/End: Complemental strand, 2107513 - 2107461
Alignment:
Q  353 tttgaataaacaacttaattaagcgctta-agcatatgcgcttatcatataag 404  Q
    |||| |||||||||||||||||||| ||| ||| |||||||||||||||||||    
T  2107513 tttggataaacaacttaattaagcgtttatagcttatgcgcttatcatataag 2107461  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 402
Target Start/End: Original strand, 26499596 - 26499646
Alignment:
Q  353 tttgaataaacaacttaattaagcgctt-aagcatatgcgcttatcatata 402  Q
    ||||||||||||||||||||||| |||| || |||| ||||||||||||||    
T  26499596 tttgaataaacaacttaattaagtgcttaaaacataagcgcttatcatata 26499646  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 405
Target Start/End: Original strand, 7008512 - 7008565
Alignment:
Q  353 tttgaataaacaacttaattaagcgctta-agcatatgcgcttatcatataaga 405  Q
    |||| |||||||||||||||||||||||| |||||| ||| |||||||| ||||    
T  7008512 tttggataaacaacttaattaagcgcttatagcataagcgtttatcataaaaga 7008565  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Complemental strand, 3181258 - 3181230
Alignment:
Q  353 tttgaataaacaacttaattaagcgctta 381  Q
    |||||||||||||||||||||||||||||    
T  3181258 tttgaataaacaacttaattaagcgctta 3181230  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Complemental strand, 49772857 - 49772829
Alignment:
Q  353 tttgaataaacaacttaattaagcgctta 381  Q
    |||||||||||||||||||||||||||||    
T  49772857 tttgaataaacaacttaattaagcgctta 49772829  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 404
Target Start/End: Complemental strand, 48133126 - 48133074
Alignment:
Q  353 tttgaataaacaacttaattaagcgctta-agcatatgcgcttatcatataag 404  Q
    |||| ||| |||||||||||||||||||| ||||||  |||||||||||||||    
T  48133126 tttggatagacaacttaattaagcgcttatagcataaacgcttatcatataag 48133074  T

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