View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2220_low_18 (Length: 408)

Name: NF2220_low_18
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2220_low_18
NF2220_low_18
[»] chr3 (23 HSPs)
chr3 (22-162)||(8400811-8400951)
chr3 (22-162)||(7417754-7417894)
chr3 (22-162)||(35198721-35198861)
chr3 (22-162)||(22855843-22855983)
chr3 (22-162)||(48077977-48078117)
chr3 (22-132)||(50823684-50823794)
chr3 (22-132)||(50852066-50852176)
chr3 (22-146)||(43334090-43334214)
chr3 (22-162)||(52545277-52545417)
chr3 (22-153)||(55467964-55468096)
chr3 (25-162)||(34824512-34824649)
chr3 (19-89)||(22371762-22371832)
chr3 (22-103)||(29635883-29635964)
chr3 (18-132)||(50726029-50726143)
chr3 (18-132)||(50786705-50786819)
chr3 (24-150)||(42876183-42876309)
chr3 (22-71)||(30534938-30534987)
chr3 (22-71)||(37330643-37330692)
chr3 (24-71)||(37454782-37454829)
chr3 (23-89)||(19872520-19872586)
chr3 (55-147)||(5548969-5549061)
chr3 (70-162)||(39438903-39438995)
chr3 (35-86)||(25589253-25589304)
[»] chr7 (17 HSPs)
chr7 (22-164)||(38265273-38265415)
chr7 (22-162)||(35109647-35109787)
chr7 (22-163)||(34721789-34721930)
chr7 (24-162)||(16059391-16059529)
chr7 (22-162)||(21577134-21577274)
chr7 (22-151)||(41151139-41151269)
chr7 (18-162)||(11216725-11216869)
chr7 (22-162)||(18116980-18117120)
chr7 (22-162)||(38405190-38405330)
chr7 (22-159)||(45278411-45278548)
chr7 (23-124)||(12472115-12472216)
chr7 (24-159)||(48176359-48176493)
chr7 (22-100)||(37095246-37095324)
chr7 (22-105)||(245300-245383)
chr7 (70-162)||(40038621-40038713)
chr7 (24-117)||(23028684-23028777)
chr7 (30-86)||(28407540-28407596)
[»] chr2 (25 HSPs)
chr2 (169-300)||(601679-601810)
chr2 (24-162)||(40155996-40156134)
chr2 (22-162)||(6672829-6672969)
chr2 (25-163)||(17136342-17136480)
chr2 (28-162)||(25987704-25987838)
chr2 (22-162)||(44650349-44650489)
chr2 (33-162)||(7860193-7860322)
chr2 (22-162)||(2754087-2754227)
chr2 (22-162)||(10745268-10745408)
chr2 (22-125)||(45137006-45137109)
chr2 (24-162)||(5039376-5039514)
chr2 (22-146)||(21637869-21637993)
chr2 (24-162)||(36380170-36380308)
chr2 (292-397)||(601221-601326)
chr2 (22-162)||(26690110-26690250)
chr2 (22-132)||(36836365-36836475)
chr2 (26-162)||(2357116-2357251)
chr2 (26-162)||(30372720-30372856)
chr2 (22-142)||(3200857-3200977)
chr2 (22-141)||(13047192-13047306)
chr2 (24-93)||(558477-558546)
chr2 (22-162)||(21487106-21487244)
chr2 (27-126)||(33066582-33066681)
chr2 (85-162)||(2098939-2099016)
chr2 (49-103)||(20961496-20961550)
[»] chr5 (5 HSPs)
chr5 (22-162)||(17064279-17064419)
chr5 (22-162)||(20983039-20983179)
chr5 (22-132)||(37976532-37976646)
chr5 (66-163)||(35237103-35237200)
chr5 (22-151)||(41910793-41910920)
[»] chr4 (22 HSPs)
chr4 (24-162)||(46494436-46494574)
chr4 (26-162)||(8740404-8740540)
chr4 (22-162)||(51066449-51066589)
chr4 (27-162)||(39863819-39863954)
chr4 (22-162)||(7173621-7173761)
chr4 (18-138)||(51713997-51714117)
chr4 (22-156)||(32139126-32139260)
chr4 (24-142)||(36192517-36192635)
chr4 (26-162)||(50905704-50905840)
chr4 (24-138)||(30970422-30970536)
chr4 (60-154)||(2294784-2294878)
chr4 (22-89)||(29576444-29576511)
chr4 (18-123)||(22423371-22423476)
chr4 (24-92)||(41523423-41523491)
chr4 (22-80)||(676766-676824)
chr4 (22-124)||(47627029-47627133)
chr4 (38-107)||(50399694-50399763)
chr4 (22-90)||(55231715-55231783)
chr4 (25-107)||(51279072-51279154)
chr4 (27-85)||(4080593-4080651)
chr4 (24-62)||(22304129-22304167)
chr4 (22-103)||(2570216-2570297)
[»] chr1 (17 HSPs)
chr1 (22-163)||(30054478-30054619)
chr1 (18-162)||(45323962-45324106)
chr1 (22-162)||(30370096-30370236)
chr1 (22-159)||(21090074-21090211)
chr1 (22-162)||(20014414-20014554)
chr1 (18-138)||(4573359-4573479)
chr1 (22-162)||(12025137-12025277)
chr1 (22-162)||(33763290-33763430)
chr1 (72-162)||(15034411-15034501)
chr1 (22-100)||(22024121-22024199)
chr1 (23-131)||(30850877-30850985)
chr1 (18-156)||(35617942-35618075)
chr1 (22-89)||(14498115-14498182)
chr1 (22-106)||(44438586-44438670)
chr1 (22-92)||(33762576-33762646)
chr1 (22-74)||(35371781-35371833)
chr1 (18-46)||(17015192-17015220)
[»] chr8 (19 HSPs)
chr8 (22-162)||(19723267-19723407)
chr8 (22-162)||(32296675-32296815)
chr8 (22-162)||(11403957-11404097)
chr8 (22-162)||(4840096-4840236)
chr8 (42-162)||(27881044-27881164)
chr8 (42-162)||(28021225-28021345)
chr8 (24-161)||(28739599-28739736)
chr8 (26-162)||(22711465-22711601)
chr8 (22-162)||(24475032-24475172)
chr8 (22-137)||(29767169-29767282)
chr8 (22-162)||(41553244-41553381)
chr8 (22-162)||(30682795-30682935)
chr8 (28-162)||(11610236-11610370)
chr8 (22-100)||(17095568-17095646)
chr8 (22-89)||(21355020-21355087)
chr8 (22-85)||(36261679-36261742)
chr8 (22-85)||(43288105-43288168)
chr8 (95-161)||(6097521-6097587)
chr8 (22-72)||(11909459-11909509)
[»] scaffold0021 (1 HSPs)
scaffold0021 (22-162)||(107727-107867)
[»] chr6 (10 HSPs)
chr6 (22-162)||(35163786-35163926)
chr6 (22-162)||(2711770-2711910)
chr6 (28-156)||(19686869-19686997)
chr6 (64-159)||(14496311-14496406)
chr6 (22-93)||(20685350-20685421)
chr6 (26-162)||(14505564-14505698)
chr6 (23-93)||(17948705-17948775)
chr6 (22-91)||(15070152-15070221)
chr6 (22-100)||(24336633-24336711)
chr6 (118-166)||(24778431-24778479)
[»] scaffold0691 (1 HSPs)
scaffold0691 (24-162)||(7007-7141)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 8400951 - 8400811
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8400951 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggatt 8400852  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  8400851 caagacctgtctttttaccactagaccaagcctttggagtt 8400811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 7417894 - 7417754
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7417894 gcagtgaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggatt 7417795  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  7417794 caagacctgtctttttaccactagaccaagcctttggagtt 7417754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 35198861 - 35198721
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||    
T  35198861 gcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctgcaaaggcattagtggggctcgaacccgggttctctcggatt 35198762  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| ||||||||||||| |||||||||| ||||    
T  35198761 caagacctgtctttttaccactagaccaagcctttgaagtt 35198721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 22855983 - 22855843
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||    
T  22855983 gcagggaagacctttgggcttaaagagcacttacaaaggtaattacatttacctccctccaaagacactagcggggctcgaacctgggttctctcgaatt 22855884  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
     |||||||||| ||||||||||||| ||| |||||||||||    
T  22855883 taagacctgtctttttaccactagaccaaacctttggagtt 22855843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 48077977 - 48078117
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    ||||||||||||||| |||||||||| ||||||||||| || |||||||||||| ||||||||||||||||   |||||||||||| ||||||||| |||    
T  48077977 gcagggaagaccttcaggctcaaagagcacttacaaagatatttacatttaccttcctccaaaggcactagtgaggctcgaacccgagttctctcgaatt 48078076  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||||||||||||||||| |||||||||| ||||    
T  48078077 caagacctgtcattttaccactagaccaagcctttgaagtt 48078117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 50823794 - 50823684
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| ||||||||||||    
T  50823794 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactaacgggactcgaacccggattctctcggatt 50823695  T
Q  122 caagacctgtc 132  Q
    |||||| ||||    
T  50823694 caagacttgtc 50823684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 50852066 - 50852176
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| ||||||||||||    
T  50852066 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactaacgggactcgaacccggattctctcggatt 50852165  T
Q  122 caagacctgtc 132  Q
    |||||| ||||    
T  50852166 caagacttgtc 50852176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 43334090 - 43334214
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||| | |||||||||| ||| |||||||||||||||||| ||| ||||||| |||||||||| ||||||||||||||||    
T  43334090 gcagggaagaccttcgggctcaaatagcacttacaaaagtatttacatttacctccctcccaagacactagcggggctcgaactcgggttctctcggatt 43334189  T
Q  122 caagacctgtcattttaccactaga 146  Q
    ||| || |||||||||||| |||||    
T  43334190 caaaacttgtcattttacctctaga 43334214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 52545417 - 52545277
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    ||||||||||||||||||||||||||  ||||||||| ||| ||||||||||||||||  |||||||||||| |||||||||||||  || |||||||||    
T  52545417 gcagggaagaccttcgggctcaaagactacttacaaaagtatttacatttacctccctttaaaggcactagcggggctcgaacccgaattttctcggatt 52545318  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||||||||| ||| ||| ||| ||||| |||||    
T  52545317 caagacctgtcattttatcaccagaccaaacctttcgagtt 52545277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 55468096 - 55467964
Alignment:
Q  22 gcagggaagaccttcggg-ctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggat 120  Q
    |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| ||| |||  |||||||||||||| |||||||| ||    
T  55468096 gcagagaagaccttcggggctcaaagagcacttacaaaggtatttacatttacctccctccaaacgcattagtggggctcgaacccggattctctcgaat 55467997  T
Q  121 tcaagacctgtcattttaccactagatcaagcc 153  Q
    ||||||| |||||||||||||||||| ||||||    
T  55467996 tcaagacatgtcattttaccactagaccaagcc 55467964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 34824649 - 34824512
Alignment:
Q  25 gggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaa 124  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||||||||| | || ||||||| | |||||||||||||||||    
T  34824649 gggaagaccttcgggatcaaagagcacttacaaagataattacatttacctcccttcaaaggcactaacgggactcgaactcaggttctctcggattcaa 34824550  T
Q  125 gacctgtcattttaccactagatcaagcctttggagtt 162  Q
    || || || ||||||||||||| |||  ||||||||||    
T  34824549 gatctatctttttaccactagaccaaatctttggagtt 34824512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 22371762 - 22371832
Alignment:
Q  19 aaagcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcac 89  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22371762 aaagcagggaagatcttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 22371832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 29635964 - 29635883
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaa 103  Q
    ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||  ||||||||    
T  29635964 gcagggaagacattcgggcttaaagagcacttacaaaggtaattacatttacctcccttcaaaggcactagcgaggctcgaa 29635883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 50726029 - 50726143
Alignment:
Q  18 caaagcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcg 117  Q
    ||||| ||||||||| ||||  |||||| |  ||||||||| ||||||| |||||||| ||||||||| ||||| | |||||||||||||  ||||||||    
T  50726029 caaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacactaacggggctcgaacccgaattctctcg 50726128  T
Q  118 gattcaagacctgtc 132  Q
    |||||||||||||||    
T  50726129 gattcaagacctgtc 50726143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 50786819 - 50786705
Alignment:
Q  18 caaagcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcg 117  Q
    ||||| ||||||||| ||||  |||||| |  ||||||||| ||||||| |||||||| ||||||||| ||||| | |||||||||||||  ||||||||    
T  50786819 caaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacactaacggggctcgaacccgaattctctcg 50786720  T
Q  118 gattcaagacctgtc 132  Q
    |||||||||||||||    
T  50786719 gattcaagacctgtc 50786705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 42876309 - 42876183
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattca 123  Q
    ||||||||| |||  | ||||||| ||||||||||||||||||||||||||||| || |||| ||||||  |||||||||| || | || |||| || ||    
T  42876309 agggaagacattcaagttcaaagagcacttacaaaggtaattacatttacctccatctaaagacactagtcgggctcgaactcgagatccctcgaataca 42876210  T
Q  124 agacctgtcattttaccactagatcaa 150  Q
    ||| || || ||||||||||| |||||    
T  42876209 agatctatctttttaccactaaatcaa 42876183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 30534938 - 30534987
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacattt 71  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  30534938 gcagggaagatcttcgggctcaaagagcacttacaaaggtaattacattt 30534987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 37330643 - 37330692
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacattt 71  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  37330643 gcagggaagaccttcggactcaaagagcacttacaaaggtaattacattt 37330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 37454782 - 37454829
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggtaattacattt 71  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||    
T  37454782 agggaagaccttcgggctcaaagagcacttacaaaggtaattatattt 37454829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 19872520 - 19872586
Alignment:
Q  23 cagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcac 89  Q
    ||||||||||||||||  |||||||  |||||||||||||||||  ||||||| |||||||||||||    
T  19872520 cagggaagaccttcggattcaaagagtacttacaaaggtaattaattttaccttcctccaaaggcac 19872586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 5549061 - 5548969
Alignment:
Q  55 caaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaagacctgtcattttaccactagat 147  Q
    |||||||| ||||||||| ||||||||||| ||| ||| |  ||||||| ||  | ||||||||||| ||||||| || ||||||||||||||    
T  5549061 caaaggtatttacatttatctccctccaaaagcattagtaaagctcgaatccaagatctctcggattgaagacctatctttttaccactagat 5548969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 39438903 - 39438995
Alignment:
Q  70 ttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    |||||| |||| |||||||||||| |   | ||||| || ||||||||||||||||| ||||| ||||| ||||| | |||||||||| ||||    
T  39438903 ttaccttcctctaaaggcactagcggaatttgaacctggattctctcggattcaagatctgtctttttaacactatagcaagcctttgaagtt 39438995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 25589304 - 25589253
Alignment:
Q  35 tcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaagg 86  Q
    |||| |||||||| ||||||| |||||| |||||||||||||| ||||||||    
T  25589304 tcggactcaaagagcacttactaaggtatttacatttacctccttccaaagg 25589253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 38265273 - 38265415
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  38265273 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccaggttctctcggatt 38265372  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagttga 164  Q
    ||||||||||| ||||||||||||| |||||||||||||||||    
T  38265373 caagacctgtctttttaccactagaccaagcctttggagttga 38265415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 35109787 - 35109647
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  35109787 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggatt 35109688  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  35109687 caagacctgtctttttaccactagaccaagcctttggagtt 35109647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 34721930 - 34721789
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||    
T  34721930 gcagggaagtccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggcttgaatccgggttctctcggatt 34721831  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagttg 163  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  34721830 caagacctgtctttttaccactagaccaagcctttggagttg 34721789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 16059391 - 16059529
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattca 123  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  16059391 agggaagaccttcgggctcagagagcacttacaaaggtaattacatttacctccctgcaaaggcactagcggggctcgaacccgggttctctcggattca 16059490  T
Q  124 agacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||| ||||||||||||  |||||||||||||||    
T  16059491 agacctgtctttttaccactagtccaagcctttggagtt 16059529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 21577134 - 21577274
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||    
T  21577134 gcagggaagaccttcggactcaaagagcacttacaaaggtatttacatttacctccctccaaaggcattagtggggctcgaacccgggttctctcggatt 21577233  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| ||||||||||||| |||||||||| ||||    
T  21577234 caagacctgtctttttaccactagaccaagcctttgaagtt 21577274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 41151269 - 41151139
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaa-ggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggat 120  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  41151269 gcagggaagaccttcgggctcaaagagcacttacaaaaggtaattacatttacctccctccaaagacactagcggggctcgaacccgggttctctcggat 41151170  T
Q  121 tcaagacctgtcattttaccactagatcaag 151  Q
    |||||||||||| ||||||||||||| ||||    
T  41151169 tcaagacctgtctttttaccactagaccaag 41151139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 11216869 - 11216725
Alignment:
Q  18 caaagcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcg 117  Q
    ||||| || ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||     
T  11216869 caaagtagagaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactaatggggctcgaacccgggttctctca 11216770  T
Q  118 gattcaagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    |||||||||||||||| |||||||||||| ||| |||||||||||    
T  11216769 gattcaagacctgtcactttaccactagaccaaacctttggagtt 11216725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 18116980 - 18117120
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||| |||||  |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||    
T  18116980 gcagggaagatcttcgacctcaaagagcacctacaaaggtaattacatttacctccctctaaaggcactagcgtggctcgaacccgggttctctcggatt 18117079  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  18117080 caagacctgtctttttaccactagaacaagcctttggagtt 18117120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 38405190 - 38405330
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||  ||||||||| ||  ||||||||||||    
T  38405190 gcagggaagaccttcgggttcaaagagcacttacaaagataattacatttacctccctccaaaggcactagcgaggctcgaactcgaattctctcggatt 38405289  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| |||||||||||||  ||||||||| ||||    
T  38405290 caagacctgtctttttaccactagacgaagcctttgaagtt 38405330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 45278548 - 45278411
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    ||||||||||| |||||| | ||||| ||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||||    
T  45278548 gcagggaagacattcgggtttaaagagcacttacaaagataattacatttacttcccttcaaaggcactagcggggctcgaacccgggttatctcggatt 45278449  T
Q  122 caagacctgtcattttaccactagatcaagcctttgga 159  Q
    |||||||| || ||||||||||||| |||| |||||||    
T  45278448 caagacctatctttttaccactagaccaagactttgga 45278411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 12472216 - 12472115
Alignment:
Q  23 cagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattc 122  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  12472216 cagggaagaccttcgtgctcaaagagcacttacaaaggtaattatatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattc 12472117  T
Q  123 aa 124  Q
    ||    
T  12472116 aa 12472115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 48176493 - 48176359
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattca 123  Q
    |||||| |||||| |||||||| | |||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||| |    
T  48176493 agggaaaaccttccggctcaaaaaacacttacaaaagtatttacatttacctccttccaaaggcactagcggggctcgaacccggattctctcggattta 48176394  T
Q  124 agacctgtcattttaccactagatcaagcctttgga 159  Q
    ||| ||||| |||||||| |||| ||||||||||||    
T  48176393 agatctgtctttttacca-tagaccaagcctttgga 48176359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 37095246 - 37095324
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctc 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  37095246 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagacactagcggggctc 37095324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 245300 - 245383
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacc 105  Q
    |||||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||||| ||||||||| |||||||||||    
T  245300 gcagggaagaccttcgggctcaaagagcgtttacaaagataattacatttacctccctccaagggcactagcggggctcgaacc 245383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 40038713 - 40038621
Alignment:
Q  70 ttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||| || ||||||||||| | || || |||  | ||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||    
T  40038713 ttacctctcttcaaaggcactaacgggacttgaattcaggttctctcagattcaagacctgtctttttaccactagatcaagtctttggagtt 40038621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 23028777 - 23028684
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcg 117  Q
    ||||||| |||||||| ||||| | |||||| |||||||||||||||||| |||||| ||||||| |||  | | |||||||||| ||||||||    
T  23028777 agggaaggccttcgggttcaaaaaacacttataaaggtaattacatttacatccctctaaaggcattagaggagttcgaacccggattctctcg 23028684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 28407596 - 28407540
Alignment:
Q  30 gaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaagg 86  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||||||||| |||||    
T  28407596 gaccttcgggctcaaagagcacttacaaaagtatttacatttacctccctctaaagg 28407540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 169 - 300
Target Start/End: Complemental strand, 601810 - 601679
Alignment:
Q  169 tatatggttacattatcaaataatttcatgttcgtttcatcattaaaagtgtttaaaataatttattctgtcaagaaaaagtttttattaaaaacaattt 268  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  601810 tatatggttacattatcaaataatttcatgttcgttccatcattaaaagtgtttaaaataatttattttgtcaagaaaaagtttttattaaaaacaattt 601711  T
Q  269 gtgcttgatcgtcaactatataaacaacttta 300  Q
    ||||||||||||||||||||| ||||||||||    
T  601710 gtgcttgatcgtcaactatattaacaacttta 601679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 40156134 - 40155996
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattca 123  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  40156134 agggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccggattctctcggattca 40156035  T
Q  124 agacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||| ||||||||||||| ||| |||||||||||    
T  40156034 agacctgtctttttaccactagaccaaacctttggagtt 40155996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 6672829 - 6672969
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  6672829 gcagggaagaccttcgggctcaaagagcgcgtacaaaggtaattacatttacctccctccaaaggcactagcggggcttgaacccgggttctctcggatt 6672928  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| ||||||||||||| ||| |||||||||||    
T  6672929 caagacctgtctttttaccactagaccaaacctttggagtt 6672969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 25 - 163
Target Start/End: Complemental strand, 17136480 - 17136342
Alignment:
Q  25 gggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaa 124  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||    
T  17136480 gggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactaacggggctcgaacccgggttctctcagattcaa 17136381  T
Q  125 gacctgtcattttaccactagatcaagcctttggagttg 163  Q
     ||||||||||||| ||||||| ||||||||||||||||    
T  17136380 aacctgtcattttatcactagaccaagcctttggagttg 17136342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 25987704 - 25987838
Alignment:
Q  28 aagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaagac 127  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  25987704 aagaccttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgagttctctcggattcaagac 25987803  T
Q  128 ctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||| |||||||| |  |||||||||||||||||    
T  25987804 ctgtctttttaccattgtatcaagcctttggagtt 25987838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 44650489 - 44650349
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| | | |||||||  ||||||||||||||||    
T  44650489 gcagggaagatcttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactaacggagctcgaaatcgggttctctcggatt 44650390  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  44650389 caagacctgtctttttaccactagaccaagcctttggagtt 44650349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 7860193 - 7860322
Alignment:
Q  33 cttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaagacctgtc 132  Q
    ||||||||||||||| |||||||||| |||  ||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||    
T  7860193 cttcgggctcaaagaacacttacaaatgtatgtacatttacctccctccaaaggcactagcggggctcaaacccaggttctctcggattcaagacctgtc 7860292  T
Q  133 attttaccactagatcaagcctttggagtt 162  Q
    |||||||||||||| |||||||||||||||    
T  7860293 attttaccactagaccaagcctttggagtt 7860322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 2754087 - 2754227
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| |||  || |||||| |||||||||||||||||    
T  2754087 gcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcattagtgggactcgaatccgggttctctcggatt 2754186  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||||||||||||||| | |||||||||| ||||    
T  2754187 caagacctgtcattttaccactaaaccaagcctttgaagtt 2754227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 10745268 - 10745408
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| |||    
T  10745268 gcagggaataccttcgggttcaaagagcacttacaaagataattacatttacctccctctaaaggcactagcggggctcggacccgggttctctcgaatt 10745367  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| ||||||||||| | |||||||||||||||    
T  10745368 caagacctgtctttttaccactaaaccaagcctttggagtt 10745408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 45137006 - 45137109
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45137006 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggatt 45137105  T
Q  122 caag 125  Q
    ||||    
T  45137106 caag 45137109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 5039514 - 5039376
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattca 123  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||||| | ||||||||||| |||||||||||||||    
T  5039514 agggaagatcttcgggctcaaagagcacttacaaaggtaattacgtttacctccctctaaaagcactagcggagctcgaacccgagttctctcggattca 5039415  T
Q  124 agacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||| ||||||||||| | |||||||||||||||    
T  5039414 agacctgtctttttaccactataccaagcctttggagtt 5039376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 21637993 - 21637869
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||| ||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||    
T  21637993 gcagagaagacctttgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcaaacccgggttctctcgaatt 21637894  T
Q  122 caagacctgtcattttaccactaga 146  Q
    |||||||| ||||||||||||||||    
T  21637893 caagacctatcattttaccactaga 21637869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 36380170 - 36380308
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattca 123  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| || |||||| ||| ||||| |||||    
T  36380170 agggaagaccttcgggctcaaagagcacttacaaagggaattacatttacctccctccaaaggcactagcggggttcaaacccgagttttctcgaattca 36380269  T
Q  124 agacctgtcattttaccactagatcaagcctttggagtt 162  Q
    |||||||||  |||||||||||| |||||||||| ||||    
T  36380270 agacctgtctgtttaccactagaccaagcctttgaagtt 36380308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 292 - 397
Target Start/End: Complemental strand, 601326 - 601221
Alignment:
Q  292 acaactttattatggagatagataactcatttggtagagctgtacgtttaaagatgtaaagaaactaaagataaataatttgaataccgacaaatatgaa 391  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  601326 acaactttattatggtgatagataactcatttggtagagctatacgttgaaagatgtaaagaaactaaagataaataatttgaataccgacaaatataaa 601227  T
Q  392 aatact 397  Q
    ||||||    
T  601226 aatact 601221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 26690250 - 26690110
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| | |||||||| |||    
T  26690250 gcagggaagaccttcgaacacaaagatcacttacaaaggtaattacatttacctccctccaaaagcactagcgggactcgaacccagattctctcgaatt 26690151  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
     || ||||||| ||||||||||||| |||||||||||||||    
T  26690150 taaaacctgtctttttaccactagaccaagcctttggagtt 26690110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 36836365 - 36836475
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| ||||||||||||||||    
T  36836365 gcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcaccagcgggactcgaactcgggttctctcggatt 36836464  T
Q  122 caagacctgtc 132  Q
    |||||||||||    
T  36836465 caagacctgtc 36836475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 2357116 - 2357251
Alignment:
Q  26 ggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaag 125  Q
    ||||||||||||  |||||| | || |||||| |||| ||||||||||||||||||||||| |||||  |  ||||||||||||||||||||||||||||    
T  2357116 ggaagaccttcgaactcaaa-agcatttacaatggtatttacatttacctccctccaaaggtactagtggaactcgaacccgggttctctcggattcaag 2357214  T
Q  126 acctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||||||||||||| |||||||||||||||    
T  2357215 acctgtcattttaccactagaccaagcctttggagtt 2357251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 30372720 - 30372856
Alignment:
Q  26 ggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaag 125  Q
    |||||||||||||||||||||| |||| |||||| || |||||||||||||| ||||||||||||||| | |||||||||| || ||||||| |||||||    
T  30372720 ggaagaccttcgggctcaaagagcactaacaaagatatttacatttacctccttccaaaggcactagcggagctcgaacccaggatctctcgaattcaag 30372819  T
Q  126 acctgtcattttaccactagatcaagcctttggagtt 162  Q
    |||| || ||||||||||||| ||| |||||||||||    
T  30372820 acctatctttttaccactagaccaaacctttggagtt 30372856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 3200977 - 3200857
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||| ||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||| || ||||||||  ||||    
T  3200977 gcagagaagatcttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaaggcactagcgaggctcgaatccaggttctcttagatt 3200878  T
Q  122 caagacctgtcattttaccac 142  Q
    ||||| ||||| |||||||||    
T  3200877 caagatctgtctttttaccac 3200857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 13047192 - 13047306
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||| ||| ||||||||||| ||||||   ||||||||| |||||||||||||||||| ||   || |||||||||||||| |||||||| |||    
T  13047192 gcagggaagatctttgggctcaaagagcactta---aggtaattatatttacctccctccaaagacat--gcggggctcgaacccggattctctcgaatt 13047286  T
Q  122 caagacctgtcattttacca 141  Q
    ||||||||||| ||||||||    
T  13047287 caagacctgtctttttacca 13047306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 558477 - 558546
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagc 93  Q
    |||||||||||||  ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  558477 agggaagaccttctagctcaaagagcacttacaaaagtaattacatttacctccctccaaaggcactagc 558546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 21487244 - 21487106
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    ||||||||||| |||||||||||||| ||||||||||  || ||||||||||||||||||||||  || ||  | |||| |||   |||  ||| |||||    
T  21487244 gcagggaagactttcgggctcaaagagcacttacaaaaatatttacatttacctccctccaaagataccagtggagctcaaacttaggt--tcttggatt 21487147  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    |||||||||||||||||||||| ||  || |||||||||||    
T  21487146 caagacctgtcattttaccacttgactaaacctttggagtt 21487106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 33066681 - 33066582
Alignment:
Q  27 gaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaaga 126  Q
    |||||||||| |||||||||| ||||||||||| || ||||||||||||| |||||||| ||||||    |||||||||||| |||||||  ||||||||    
T  33066681 gaagaccttcaggctcaaagagcacttacaaagatatttacatttacctctctccaaagacactagtgaagctcgaacccggattctctcaaattcaaga 33066582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 2098939 - 2099016
Alignment:
Q  85 ggcactagcagggctcgaacccgggttctctcggattcaagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||| | | ||||||| ||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||||    
T  2098939 ggcactagcggagttcgaacctgggttctctcgaattcaagacctatcattttaccaatagaccaagcctttggagtt 2099016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 20961550 - 20961496
Alignment:
Q  49 cacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaa 103  Q
    |||||||||| | | |||||||||||||||||||| ||||||||| | |||||||    
T  20961550 cacttacaaatggatttacatttacctccctccaagggcactagcggagctcgaa 20961496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 17064419 - 17064279
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  17064419 gcagggaagaccttcgggcttaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcgaggctcgaacccgggttctctcggatt 17064320  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  17064319 caagacctgtcattttaccactagaccaagcctttggagtt 17064279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 20983039 - 20983179
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    ||||||||||| |||||||||||||| |||||||||| |||||| |||||||||| |||| ||||||||||| |||||||||||||| |||||| |||||    
T  20983039 gcagggaagactttcgggctcaaagagcacttacaaatgtaattgcatttacctctctccgaaggcactagcggggctcgaacccggattctcttggatt 20983138  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| ||||| ||||||| |||||||||||||||    
T  20983139 caagacctgtctttttatcactagaccaagcctttggagtt 20983179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 37976646 - 37976532
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatt----tacctccctccaaaggcactagcagggctcgaacccgggttctctcg 117  Q
    ||||| || ||||||||||||||| | |||||||||||||| |||||||    ||||||||| |||| |||||||| |||||||||||| ||||||||||    
T  37976646 gcaggaaaaaccttcgggctcaaatagcacttacaaaggtatttacattaatttacctcccttcaaatgcactagcggggctcgaacccaggttctctcg 37976547  T
Q  118 gattcaagacctgtc 132  Q
    |||||||||||||||    
T  37976546 gattcaagacctgtc 37976532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 66 - 163
Target Start/End: Original strand, 35237103 - 35237200
Alignment:
Q  66 acatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaagacctgtcattttaccactagatcaagcctttggagttg 163  Q
    |||||||||||||| ||||| ||||||| ||||||||| || | |||||||| ||||||||| | |||||||||||||||| ||||||||| ||||||    
T  35237103 acatttacctcccttcaaagacactagcggggctcgaatccagattctctcgaattcaagacgtatcattttaccactagaccaagcctttagagttg 35237200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 41910920 - 41910793
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||| |||||| |||||||||||||| ||||||||||| ||||||||||||||| |||||||||  |||| ||   ||| |||||   ||||||| ||||    
T  41910920 gcagagaagacattcgggctcaaagaacacttacaaagttaattacatttacct-cctccaaagatactaaca-aactcaaacccaaattctctcagatt 41910823  T
Q  122 caagacctgtcattttaccactagatcaag 151  Q
    ||||||||||| ||||||||||||| ||||    
T  41910822 caagacctgtctttttaccactagagcaag 41910793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 46494436 - 46494574
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattca 123  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  46494436 agggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattca 46494535  T
Q  124 agacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  46494536 agacctgtcattttaccactagaccaaacctttggagtt 46494574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 8740540 - 8740404
Alignment:
Q  26 ggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaag 125  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  8740540 ggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcgaacccgggatctctcggattcaag 8740441  T
Q  126 acctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  8740440 acctgtctttttaccactagaccaagcctttggagtt 8740404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 51066589 - 51066449
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  51066589 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattatatttacctccctccaaaggcactagcggagctcgaacccgagttctctcggatt 51066490  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| ||||||||||||| |||| ||||||||||    
T  51066489 caagacctgtctttttaccactagaccaagtctttggagtt 51066449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 39863819 - 39863954
Alignment:
Q  27 gaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaaga 126  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||  |||||||||||||||||||||||||||    
T  39863819 gaagaccttcgggttcaaagagcacttacaaaggtaattacatttacttccctccaaaggcactagcggggtccgaacccgggttctctcggattcaaga 39863918  T
Q  127 cctgtcattttaccactagatcaagcctttggagtt 162  Q
    |||||| ||||||||||||| |||||||||||||||    
T  39863919 cctgtctttttaccactagaccaagcctttggagtt 39863954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 7173621 - 7173761
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| |||||||||||||| | |||||||||||| ||||||||||||||| || || |||||  ||||||||||||||    
T  7173621 gcagggaagaccttcgggctcaaagagcacttacaaaggtattgacatttacctccttccaaaggcactagcgggtcttgaacctaggttctctcggatt 7173720  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  7173721 caagacctgtcattttaccactagaccaagcctttggagtt 7173761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 51713997 - 51714117
Alignment:
Q  18 caaagcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcg 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  51713997 caaagcagggaagaccttcgggctcaaagagcacttacaaaggtatttatatttacctcccttcaaaggcactagtggggctcgaacccgggttctctcg 51714096  T
Q  118 gattcaagacctgtcatttta 138  Q
    |||||||||||||||||||||    
T  51714097 gattcaagacctgtcatttta 51714117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 156
Target Start/End: Complemental strand, 32139260 - 32139126
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||||    
T  32139260 gcagagaagaccttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaagacactagcggggttcgaacccaggttctctcggatt 32139161  T
Q  122 caagacctgtcattttaccactagatcaagccttt 156  Q
    || |||||||| ||||||||||||| |||||||||    
T  32139160 catgacctgtccttttaccactagaccaagccttt 32139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 36192635 - 36192517
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattca 123  Q
    |||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||    
T  36192635 agggaagaccttcgggctcaaagagcatttacaaaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcgaattca 36192536  T
Q  124 agacctgtcattttaccac 142  Q
    ||||||||| |||||||||    
T  36192535 agacctgtctttttaccac 36192517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 50905840 - 50905704
Alignment:
Q  26 ggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaag 125  Q
    ||||||||||||| |||||||| ||| ||||||| |||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||    
T  50905840 ggaagaccttcggactcaaagagcacctacaaagataattacatttacctctctccaaaggcactagcggggctcgaacccagattctctcggattcaag 50905741  T
Q  126 acctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||| |||||||||||||  || |||||||||||    
T  50905740 acctgtctttttaccactagactaaacctttggagtt 50905704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 30970422 - 30970536
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattca 123  Q
    |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||||||   ||||||||||||| ||||||||||||||    
T  30970422 agggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagtgaggctcgaacccggattctctcggattca 30970521  T
Q  124 agacctgtcatttta 138  Q
    |||||||||||||||    
T  30970522 agacctgtcatttta 30970536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 2294784 - 2294878
Alignment:
Q  60 gtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaagacctgtcattttaccactagatcaagcct 154  Q
    |||||||||||||||| |||||||||||||||||    |||||||||| ||||||||| |||||||||||||| ||||||||||||| |||||||    
T  2294784 gtaattacatttaccttcctccaaaggcactagcgaaactcgaacccgagttctctcgaattcaagacctgtctttttaccactagaccaagcct 2294878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 29576511 - 29576444
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcac 89  Q
    |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  29576511 gcagggaagaccttcgggctcaaagagcacttacaaagttatttacatttacctccctccaaaggcac 29576444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 22423476 - 22423371
Alignment:
Q  18 caaagcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcg 117  Q
    ||||||||||||||||||||  | |||||| |||||||||| ||| ||||||||||||||||||||||| |||| | ||||||||| ||| | ||||||     
T  22423476 caaagcagggaagaccttcgaacacaaagaacacttacaaaagtatttacatttacctccctccaaaggtactaaccgggctcgaatccgagatctctca 22423377  T
Q  118 gattca 123  Q
    ||||||    
T  22423376 gattca 22423371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 41523491 - 41523423
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactag 92  Q
    |||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||||||| ||||||    
T  41523491 agggaagaccttcgagctcaaagagcacttataaaggtatttacatttacctccctccaaagacactag 41523423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 676824 - 676766
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctc 80  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||    
T  676824 gcagggaagaccttcgggctcaaagagcacttacaaaggtatttacacttacctccctc 676766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 47627029 - 47627133
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcaggg--ctcgaacccgggttctctcgga 119  Q
    |||||||||||||||| | |||||||  | ||| | ||||| |||||||||||||||| ||||||||||||  |||  |||||| |||||||||||||||    
T  47627029 gcagggaagaccttcgagttcaaagagtatttatagaggtatttacatttacctcccttcaaaggcactagtggggctctcgaatccgggttctctcgga 47627128  T
Q  120 ttcaa 124  Q
    |||||    
T  47627129 ttcaa 47627133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 50399694 - 50399763
Alignment:
Q  38 ggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccg 107  Q
    |||||||||| |||||||||||||| |||||||||||| |||||||  |||||||| |||||||||||||    
T  50399694 ggctcaaagaacacttacaaaggtatttacatttaccttcctccaagagcactagcggggctcgaacccg 50399763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 55231783 - 55231715
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcact 90  Q
    ||||||||||| ||| |||||||||| |||||||||| ||| |||||||||||||||| ||||||||||    
T  55231783 gcagggaagacattcaggctcaaagagcacttacaaaagtatttacatttacctcccttcaaaggcact 55231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 51279072 - 51279154
Alignment:
Q  25 gggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccg 107  Q
    ||||||||||| ||||||||||| |||||||||| ||| ||||||| ||||||||| ||| ||| ||| ||||||| ||||||    
T  51279072 gggaagacctttgggctcaaagagcacttacaaaagtatttacattgacctccctctaaaagcattagtagggctcaaacccg 51279154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 4080593 - 4080651
Alignment:
Q  27 gaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaag 85  Q
    |||||| ||| | |||||||| || ||||||| ||||||||||||||||||||||||||    
T  4080593 gaagacattcagactcaaagagcatttacaaatgtaattacatttacctccctccaaag 4080651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 22304129 - 22304167
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggta 62  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  22304129 agggaagaccttcgggctcaaagagcacttacaaaggta 22304167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 2570297 - 2570216
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaa 103  Q
    |||||||||| |||||| |||||||| || ||| || | || ||| |||||||||||||||||||||| ||| | |||||||    
T  2570297 gcagggaagatcttcggactcaaagaacatttataatgatatttatatttacctccctccaaaggcaccagcggagctcgaa 2570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 30054478 - 30054619
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30054478 gcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggatt 30054577  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagttg 163  Q
    |||||| || | ||||||||||||| ||||||||||||||||    
T  30054578 caagacttgactttttaccactagaccaagcctttggagttg 30054619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 45324106 - 45323962
Alignment:
Q  18 caaagcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcg 117  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||| ||||||||||    
T  45324106 caaagcagggaagaccttcgggctcaaggagcacttacaaaggtatttacatttacctccctccaaaagcactagcggggctggaacccaggttctctcg 45324007  T
Q  118 gattcaagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||    
T  45324006 gattcaagacctgtcgttttaccactagaccaagcctttggagtt 45323962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 30370096 - 30370236
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||| |||    
T  30370096 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagacactagtggggctcgaacccggattctctcgaatt 30370195  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||| || |||| ||||||||||||| |||||||||||||||    
T  30370196 caaaacttgtctttttaccactagaccaagcctttggagtt 30370236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 21090211 - 21090074
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| || ||||||| ||| |||||||||||||||||||| ||||||||| |||||||||||||  |||||||| |||    
T  21090211 gcagggaagaccttcgggctcaaagagcatttacaaatgtatttacatttacctccctccaacggcactagcggggctcgaacccgaattctctcgaatt 21090112  T
Q  122 caagacctgtcattttaccactagatcaagcctttgga 159  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  21090111 caagacctgtcattttaccactagaccaagcctttgga 21090074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 20014554 - 20014414
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    ||||||||||||||| |||||||||| || ||||||| ||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||    
T  20014554 gcagggaagaccttcaggctcaaagagcatttacaaatgtaattacatttacctccctccaaaggtactagcgggactcgaacccgggttctctcggatt 20014455  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||| ||||| ||||||||||||| |||| ||||||||||    
T  20014454 caagatctgtctttttaccactagaccaagactttggagtt 20014414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 4573479 - 4573359
Alignment:
Q  18 caaagcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcg 117  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| || |||  |||||||||||||||||||||||    
T  4573479 caaaacagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaagacattagtggggctcgaacccgggttctctcg 4573380  T
Q  118 gattcaagacctgtcatttta 138  Q
    ||||||||||||||| |||||    
T  4573379 gattcaagacctgtcttttta 4573359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 12025277 - 12025137
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||||||||| |||||||||||||||   |||||||||||| |||||||||| |||    
T  12025277 gcagggaagaccttcgggctcaaatagtacttacaaaggtaattacatttaccttcctccaaaggcactaatggggctcgaacccaggttctctcgaatt 12025178  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||| ||||  ||||||||||||| |||| ||||||||||    
T  12025177 caagatctgtatttttaccactagaccaagtctttggagtt 12025137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 33763290 - 33763430
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||| || |||||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||  | |||||||| |||    
T  33763290 gcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctccctctaaaggcactagcggggctcgaacctagattctctcgaatt 33763389  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| |||||| |||||| ||| ||||| |||||    
T  33763390 caagacctgtctttttactactagaccaaacctttagagtt 33763430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 15034501 - 15034411
Alignment:
Q  72 acctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||    
T  15034501 acctccctccaaaggcactagtagggctcgaacctgggttctttcggattcaagacctgtctttttaccactagaccaagcctttggagtt 15034411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 22024199 - 22024121
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctc 100  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22024199 gcagagaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccatccaaaggcactagcagggctc 22024121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 30850877 - 30850985
Alignment:
Q  23 cagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattc 122  Q
    |||| |||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||||| ||||| | ||||||||||||| |||||||||||||     
T  30850877 caggaaagaccttcgggttcaaagagcacttacaaaggcaattatatttacctccctccaaagacactaacggggctcgaacccgagttctctcggattt 30850976  T
Q  123 aagacctgt 131  Q
    |||| ||||    
T  30850977 aagatctgt 30850985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 35618075 - 35617942
Alignment:
Q  18 caaagcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcg 117  Q
    ||||||| |||||||||||||||||||||| |||||||||||     ||||||||| |||||  |||||||||| | | ||||||| |  |||||||| |    
T  35618075 caaagcaaggaagaccttcgggctcaaagagcacttacaaag----ctacatttacatccct-gaaaggcactaacggagctcgaatctaggttctcttg 35617981  T
Q  118 gattcaagacctgtcattttaccactagatcaagccttt 156  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  35617980 gattcaagacctgtcattttaccactagaccaaaccttt 35617942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 14498115 - 14498182
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcac 89  Q
    |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14498115 gcagggaagacctttggtctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 14498182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 44438586 - 44438670
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaaccc 106  Q
    ||||||||||||||||   | ||||| |||||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||    
T  44438586 gcagggaagaccttcgaatttaaagaacacttacaaaagtaattacatttacctccctccaaaggcattagcggagctcgaaccc 44438670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 33762576 - 33762646
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactag 92  Q
    |||||||| || |||||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||    
T  33762576 gcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctccctctaaaggcactag 33762646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 35371781 - 35371833
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacc 74  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  35371781 gcagggaagaacttcgggctcaaagagcacttacaaaggtaattacatttacc 35371833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 17015220 - 17015192
Alignment:
Q  18 caaagcagggaagaccttcgggctcaaag 46  Q
    |||||||||||||||||||||||||||||    
T  17015220 caaagcagggaagaccttcgggctcaaag 17015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 19723407 - 19723267
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19723407 gcagggaagatctttgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggatt 19723308  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| ||||||||||||| ||| |||||||||||    
T  19723307 caagacctgtctttttaccactagaccaaacctttggagtt 19723267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 32296675 - 32296815
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||  |||    
T  32296675 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcccttcaaaggcactagcagggcttgaacccgggttctctcaaatt 32296774  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| ||||||||||||| ||| |||||||||||    
T  32296775 caagacctgtctttttaccactagaccaaacctttggagtt 32296815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 11404097 - 11403957
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||  ||||||||||| |||||||||| |||    
T  11404097 gcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagacactagcgaggctcgaacccaggttctctcgaatt 11403998  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||||||||||||||||| |||| ||||||||||    
T  11403997 caagacctgtcattttaccactagaccaagtctttggagtt 11403957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 4840236 - 4840096
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||| || |||||||| ||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4840236 gcagggaagacctttggactcaaagagcacttacaatggtaatgacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggatt 4840137  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||| |||| || ||||||||||||| |||||||||||||||    
T  4840136 caaaacctatctttttaccactagaccaagcctttggagtt 4840096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 27881044 - 27881164
Alignment:
Q  42 caaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaagacctgtcattttacca 141  Q
    |||||| |||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  27881044 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 27881143  T
Q  142 ctagatcaagcctttggagtt 162  Q
    ||||| |||||||||||||||    
T  27881144 ctagaccaagcctttggagtt 27881164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 28021225 - 28021345
Alignment:
Q  42 caaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaagacctgtcattttacca 141  Q
    |||||| |||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  28021225 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 28021324  T
Q  142 ctagatcaagcctttggagtt 162  Q
    ||||| |||||||||||||||    
T  28021325 ctagaccaagcctttggagtt 28021345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 28739599 - 28739736
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattca 123  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||| | ||||||||||||||||  ||||| |||||| |||||||| | |||||    
T  28739599 agggaagaccttcgggctcaaagagcacttacaaaggtatttacatttactttcctccaaaggcactagtggggcttgaacccaggttctctagaattca 28739698  T
Q  124 agacctgtcattttaccactagatcaagcctttggagt 161  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  28739699 agacctgtcattttaccactagaccaagcctttggagt 28739736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 22711601 - 22711465
Alignment:
Q  26 ggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaag 125  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||  || ||| |||||| |||||||||||||||||    
T  22711601 ggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcattagttggactcaaacccgagttctctcggattcaag 22711502  T
Q  126 acctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||| ||||||||||||| ||| |||||||||||    
T  22711501 acctgtctttttaccactagaccaaacctttggagtt 22711465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 24475032 - 24475172
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | |||||||  ||  |||| |||||||    
T  24475032 gcaggaaagaccttcgggctcaaagaacacttacaaaggtatttacatttacctccctccaaaggcactagcggagctcgaattcgaattctatcggatt 24475131  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||||| |||| |||||| |||||||||||||||    
T  24475132 caagacctgtcatcttactactagaccaagcctttggagtt 24475172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 29767282 - 29767169
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||| ||||||||||||| |||||||| ||||||||||||| ||||    
T  29767282 gcagggaagaccttcgggctcaaagaacacttacaaaggtaatta--tttacctcccttcaaaggcactagcggggctcgaccccgggttctctcagatt 29767185  T
Q  122 caagacctgtcatttt 137  Q
    ||||||||||| ||||    
T  29767184 caagacctgtcttttt 29767169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 41553381 - 41553244
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||| ||||||||| |||||||||||||| |||||||||| | ||||||||| || |||  || ||||||| |||||||||||| |||    
T  41553381 gcagggaagaccttcgagctcaaagaacacttacaaaggtatttacatttacgttcctccaaagacattagtgggactcgaactcgggttctctcgaatt 41553282  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    |||||||| ||||||||||||   |||||||||||||||||    
T  41553281 caagacctatcattttaccac---atcaagcctttggagtt 41553244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 30682935 - 30682795
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||| ||||||||||||||| |||||||||| ||| ||||||||| ||| |||||||||||| ||  |||||||||| |||| ||||| | |||    
T  30682935 gcagggaagatcttcgggctcaaagaacacttacaaaagtatttacatttatctctctccaaaggcaccagtggggctcgaacacgggctctcttgaatt 30682836  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||| ||| |||| |||||||||| |||||||||||||||    
T  30682835 caagaactgccattgtaccactagaccaagcctttggagtt 30682795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 11610370 - 11610236
Alignment:
Q  28 aagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaagac 127  Q
    |||||||||||||| ||| | ||||||||||| || ||| ||||||||  ||||||||||||||||  |||||||| ||| | |||||||||||||||||    
T  11610370 aagaccttcgggcttaaacagcacttacaaagatatttatatttacctttctccaaaggcactagcgaggctcgaatccgagatctctcggattcaagac 11610271  T
Q  128 ctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||| ||||||||||||| ||| |||||||||||    
T  11610270 ctgtctttttaccactagaccaaacctttggagtt 11610236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 17095646 - 17095568
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctc 100  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17095646 gcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggcactagcggggctc 17095568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 21355020 - 21355087
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcac 89  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21355020 gcagggaagaccttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 21355087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 36261742 - 36261679
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaag 85  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36261742 gcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 36261679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 43288168 - 43288105
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaag 85  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||    
T  43288168 gcagggaagaccttcggactcaaaaatcaattacaaaggtaattacatttacctccctccaaag 43288105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 6097587 - 6097521
Alignment:
Q  95 gggctcgaacccgggttctctcggattcaagacctgtcattttaccactagatcaagcctttggagt 161  Q
    |||||||||| ||| |||||||| |||||||||||||| ||||||||  ||| ||||| ||||||||    
T  6097587 gggctcgaactcggattctctcgaattcaagacctgtctttttaccataagaccaagcttttggagt 6097521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 11909459 - 11909509
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacattta 72  Q
    |||||||||||||||| ||||||||| |||||| ||||||| |||||||||    
T  11909459 gcagggaagaccttcgagctcaaagagcacttagaaaggtatttacattta 11909509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 107727 - 107867
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||    
T  107727 gcagggtagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaactcgggttctctcgaatt 107826  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| ||||||||||||| |||| ||||||||||    
T  107827 caagacctgtctttttaccactagaccaagtctttggagtt 107867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 35163786 - 35163926
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||  |||||||||||| ||||||||||||||    
T  35163786 gcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcattagtggggctcgaaccctggttctctcggatt 35163885  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||| ||||||||||||| |||||||||| ||||    
T  35163886 caagacctgtctttttaccactagaccaagcctttgaagtt 35163926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 2711770 - 2711910
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggatt 121  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| |||||||  ||||||||| || |||||| |||||||    
T  2711770 gcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaaagcactagtggggctcgaatccaggttctatcggatt 2711869  T
Q  122 caagacctgtcattttaccactagatcaagcctttggagtt 162  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  2711870 caagacctgtcattttaccactagaccaagcctttcgagtt 2711910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 19686869 - 19686997
Alignment:
Q  28 aagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaagac 127  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||| ||||||||||    
T  19686869 aagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctacaaaggcactagaggggctcgaacccaggttctctcagattcaagac 19686968  T
Q  128 ctgtcattttaccactagatcaagccttt 156  Q
    ||||  ||||||||||||| ||| |||||    
T  19686969 ctgtttttttaccactagaccaaaccttt 19686997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 64 - 159
Target Start/End: Complemental strand, 14496406 - 14496311
Alignment:
Q  64 ttacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaagacctgtcattttaccactagatcaagcctttgga 159  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| ||||||||    
T  14496406 ttacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctttctttttaccactagaccaaacctttgga 14496311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 20685421 - 20685350
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagc 93  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20685421 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagc 20685350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 14505564 - 14505698
Alignment:
Q  26 ggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattcaag 125  Q
    |||||| ||||| || ||||||  | ||||||||||| ||||||||||||||||||||| |||||||| |||||||||  |||| ||||||||||||||     
T  14505564 ggaagatcttcgcgcccaaagaatatttacaaaggta-ttacatttacctccctccaaaagcactagcggggctcgaattcgggatctctcggattcaa- 14505661  T
Q  126 acctgtcattttaccactagatcaagcctttggagtt 162  Q
    || |||  ||||||| ||||| |||||||||||||||    
T  14505662 acttgtttttttacctctagaccaagcctttggagtt 14505698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 17948775 - 17948705
Alignment:
Q  23 cagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagc 93  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |||||||    
T  17948775 cagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctctctccaaagacactagc 17948705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 15070221 - 15070152
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcacta 91  Q
    ||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||    
T  15070221 gcagggaagaccttcgggctcaatgaacacttacaaatgtaattatatttacctccctccaaaggcacta 15070152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 24336711 - 24336633
Alignment:
Q  22 gcagggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctc 100  Q
    |||||||||| |||| |||||||| | |||||||||| ||| ||||||||||||||||||||||| |||||||| ||||    
T  24336711 gcagggaagatcttcaggctcaaaaaacacttacaaaagtatttacatttacctccctccaaagggactagcagagctc 24336633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 24778479 - 24778431
Alignment:
Q  118 gattcaagacctgtcattttaccactagatcaagcctttggagttgatc 166  Q
    ||||||| | ||||| ||||||||||||||||| ||||||||| |||||    
T  24778479 gattcaatatctgtctttttaccactagatcaaacctttggagatgatc 24778431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 7007 - 7141
Alignment:
Q  24 agggaagaccttcgggctcaaagatcacttacaaaggtaattacatttacctccctccaaaggcactagcagggctcgaacccgggttctctcggattca 123  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||| |||||||| || ||||||||||| |||||||   |||     
T  7007 agggaagaccttcggactcaaagaacacttgcaaaggtaattacatttacttccctccaaacgcactagcgggactcgaacccggattctctc---ttcg 7103  T
Q  124 agacctgtcattttaccactagatcaagcctttggagtt 162  Q
    || |||||| ||||||||||| | |||||||||||||||    
T  7104 agtcctgtctttttaccacta-aacaagcctttggagtt 7141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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