View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2220_low_20 (Length: 388)

Name: NF2220_low_20
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2220_low_20
NF2220_low_20
[»] chr6 (12 HSPs)
chr6 (1-378)||(18994359-18994736)
chr6 (5-86)||(18990109-18990190)
chr6 (1-90)||(20235043-20235133)
chr6 (1-90)||(22129027-22129117)
chr6 (127-187)||(18985132-18985192)
chr6 (5-49)||(22210129-22210173)
chr6 (123-184)||(20082973-20083034)
chr6 (205-367)||(12423850-12424014)
chr6 (139-187)||(18978703-18978751)
chr6 (42-98)||(20083052-20083108)
chr6 (135-186)||(20234966-20235018)
chr6 (135-186)||(22128950-22129002)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-310)||(50723-51032)
[»] scaffold0007 (2 HSPs)
scaffold0007 (5-92)||(8287-8374)
scaffold0007 (120-187)||(8365-8431)
[»] chr5 (1 HSPs)
chr5 (238-378)||(18800158-18800299)
[»] chr8 (2 HSPs)
chr8 (186-378)||(16215007-16215201)
chr8 (285-376)||(17715493-17715585)
[»] chr7 (6 HSPs)
chr7 (261-371)||(18774367-18774478)
chr7 (264-378)||(4781096-4781211)
chr7 (264-378)||(4813527-4813642)
chr7 (278-378)||(23629390-23629489)
chr7 (185-256)||(1979379-1979450)
chr7 (16-64)||(11369947-11369995)


Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 18994736 - 18994359
Alignment:
Q  1 attaatgtaatttacctttgatgatgtataagtaaatgctttacaagggcattgtgcccaataacctcatttaccctttaatgattaaattttggttaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18994736 attaatgtaatttacctttgatgatgtataagtaaatgctttacaagggcattgtgcccaataacctcatttaccctttaatgattaaattttggttaat 18994637  T
Q  101 gaggaaacacttggagcgagattgaatttgattagaaagatgaatagaagaaatgcaaagtatttattggaaactttcaatgaaattaagtgccaactac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18994636 gaggaaacacttggagcgagattgaatttgattagaaagataaatagaagaaatgcaaagtatttattggaaactttcaatgaaattaagtgccaactac 18994537  T
Q  201 tcctactaactcaaagtcagacgccatcatttgcagacggaatcaaagcttcccaaaagccatttcaagggtcgtctgacttagctcaccaatggacgcc 300  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18994536 tcctactaactcaaagtcggacgccatcattcgcagacggaatcaaagcttcccaatagccatttcaagggtcgtctgacttagctcaccaatggacgcc 18994437  T
Q  301 acactctttacgggcaggcttcagttcctgacaaaagcatcgagggccaccggactaagccgtcgacgagcgcctttg 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18994436 acactctttacgggcaggcttcagttcctgacaaaagcatcgagggccaccggactaagccgtcgacgagcgtctttg 18994359  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 18990190 - 18990109
Alignment:
Q  5 atgtaatttacctttgatgatgtataagtaaatgctttacaagggcattgtgcccaataacctcatttaccctttaatgatt 86  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||    
T  18990190 atgtaatttacctttcatgatgtataagtaaatgctttacaagggcattgttcccaataacttcgtttaccctttaatgatt 18990109  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 20235133 - 20235043
Alignment:
Q  1 attaatgtaatttacc-tttgatgatgtataagtaaatgctttacaagggcattgtgcccaataacctcatttaccctttaatgattaaat 90  Q
    ||||||||||||| || |||||||||||||||  ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||    
T  20235133 attaatgtaattttccctttgatgatgtataatcaaatgctctataagggcattgtgcccaataacctcatttaccctttgatgattaaat 20235043  T

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Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 22129117 - 22129027
Alignment:
Q  1 attaatgtaatttacc-tttgatgatgtataagtaaatgctttacaagggcattgtgcccaataacctcatttaccctttaatgattaaat 90  Q
    ||||||||||||| || |||||||||||||||  ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||    
T  22129117 attaatgtaattttccctttgatgatgtataatcaaatgctctataagggcattgtgcccaataacctcatttaccctttgatgattaaat 22129027  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 18985192 - 18985132
Alignment:
Q  127 tttgattagaaagatgaatagaagaaatgcaaagtatttattggaaactttcaatgaaatt 187  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18985192 tttgtttagaaagatgaatagaagaaatgcaaagtatttattggaaactttcaatgaaatt 18985132  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 22210129 - 22210173
Alignment:
Q  5 atgtaatttacctttgatgatgtataagtaaatgctttacaaggg 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22210129 atgtaatttacctttgatgatgtataagtaaatgctttacaaggg 22210173  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 20083034 - 20082973
Alignment:
Q  123 tgaatttgattagaaagatgaatagaagaaatgcaaagtatttattggaaactttcaatgaa 184  Q
    |||||||| |||||||||||||||||||||||||| |  ||| | |||||||||||||||||    
T  20083034 tgaatttgtttagaaagatgaatagaagaaatgcagaagattcaatggaaactttcaatgaa 20082973  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 367
Target Start/End: Original strand, 12423850 - 12424014
Alignment:
Q  205 actaactcaaagtcagacgccatcatttgcagacggaatcaaagcttcccaa-aagccatttcaagggtcgtctgacttagctcaccaatggacgccaca 303  Q
    ||||||||||| |||| ||||||||  |||||||||| ||||||||||||||  |  || ||||| ||||| | ||| ||  ||| |||  || |||| |    
T  12423850 actaactcaaaatcaggcgccatcacctgcagacggagtcaaagcttcccaacgaaacacttcaaaggtcggccgacataaatcatcaacagatgccata 12423949  T
Q  304 ctctttacgggcaggcttcagttcctgaca-aaagcatcgagggccaccggactaagccgtcgac 367  Q
    |||||| ||||| || || ||||||||||| || |||||||||||| ||| |||||| |||||||    
T  12423950 ctctttgcgggcgggtttaagttcctgacacaacgcatcgagggccgccgaactaagtcgtcgac 12424014  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 18978751 - 18978703
Alignment:
Q  139 gatgaatagaagaaatgcaaagtatttattggaaactttcaatgaaatt 187  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  18978751 gatgaatagaagaaatccaaaggattcattggaaactttcaatgaaatt 18978703  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 20083108 - 20083052
Alignment:
Q  42 tacaagggcattgtgcccaataacctcatttaccctttaatgattaaattttggtta 98  Q
    |||||||||||||| ||  |||||||||| |||||||||||||| ||||||||||||    
T  20083108 tacaagggcattgttccatataacctcatataccctttaatgatgaaattttggtta 20083052  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 20235018 - 20234966
Alignment:
Q  135 gaaagatgaatagaagaaatgcaaagtattta-ttggaaactttcaatgaaat 186  Q
    ||||||||||||||||||||||||   ||| | ||||||||||||||||||||    
T  20235018 gaaagatgaatagaagaaatgcaagtgattcatttggaaactttcaatgaaat 20234966  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 22129002 - 22128950
Alignment:
Q  135 gaaagatgaatagaagaaatgcaaagtattta-ttggaaactttcaatgaaat 186  Q
    ||||||||||||||||||||||||   ||| | ||||||||||||||||||||    
T  22129002 gaaagatgaatagaagaaatgcaagtgattcatttggaaactttcaatgaaat 22128950  T

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Target: scaffold0074 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 50723 - 51032
Alignment:
Q  1 attaatgtaatttacctttgatgatgtataagtaaatgctttacaagggcattgtgcccaataacctcatttaccctttaatgattaaattttggttaat 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50723 attaatgtaatttacctttgatgatgtataagtaaacgctttacaagggcattgtgcccaataacctcatttaccctttaatgattaaattttggttaat 50822  T
Q  101 gaggaaacacttggagcgagattgaatttgattagaaagatgaatagaagaaatgcaaagtatttattggaaactttcaatgaaattaagtgccaactac 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50823 gaggaaacacttggagcgagattgaatttgtttagaaagatgaatagaagaaatgcaaagtatttattggaaactttcaatgaaattaagtgccaactac 50922  T
Q  201 tcctactaactcaaagtcagacgccatcatttgcagacggaatcaaagcttcccaaaagccatttcaagggtcgtctgacttagctcaccaatggacgcc 300  Q
    |||||||||||||||||| |||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  50923 tcctactaactcaaagtcggacgccatcactcgcagacggaatcaaagcttcccaacagccatttcaagggtcgtctgacttagctcaccaacggacgcc 51022  T
Q  301 acactcttta 310  Q
    ||||||||||    
T  51023 acactcttta 51032  T

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Target: scaffold0007 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 8287 - 8374
Alignment:
Q  5 atgtaatttacctttgatgatgtataagtaaatgctttacaagggcattgtgcccaataacctcatttaccctttaatgattaaattt 92  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||    
T  8287 atgtaatttacctttcatgatgtataagtaaatgctttacaagggcattgttcccaataacttcatttaccctttaatgattgaattt 8374  T

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Target: scaffold0007; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 8365 - 8431
Alignment:
Q  120 gattgaatttgattagaaagatgaatagaagaaatgcaaagtatttattggaaactttcaatgaaatt 187  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8365 gattgaatttg-ttagaaagatgaatagaagaaatgcaaagtatttattggaaactttcaatgaaatt 8431  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 238 - 378
Target Start/End: Complemental strand, 18800299 - 18800158
Alignment:
Q  238 cggaatcaaagcttcccaaaagccatttcaagggtcgtctgacttagctcaccaatggacgccacactctttacgggcaggcttcagttcctgaca-aaa 336  Q
    |||||||||||||| |||| |  || |||||||| |||| ||||||||||| |||||||| ||||||||||| ||||| ||||||||||| ||||| ||     
T  18800299 cggaatcaaagcttaccaacaaacacttcaagggccgtccgacttagctcatcaatggacaccacactctttgcgggcgggcttcagttcttgacacaac 18800200  T
Q  337 gcatcgagggccaccggactaagccgtcgacgagcgcctttg 378  Q
    |||||||||||| |||||||||| ||| ||||||||||||||    
T  18800199 gcatcgagggccgccggactaagtcgttgacgagcgcctttg 18800158  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 186 - 378
Target Start/End: Complemental strand, 16215201 - 16215007
Alignment:
Q  186 ttaagtgccaactactcctactaactcaaagtcagacgccatcatttgcagacggaatcaaagcttcccaa-aagccatttcaagggtcgtctgacttag 284  Q
    |||||||||||||||||| ||||||| |||||  | |||||||| | | |||||||| |||||||||| || ||  || |||||||| ||||||||||||    
T  16215201 ttaagtgccaactactcccactaacttaaagttgggcgccatcactcgaagacggaaccaaagcttcctaacaaaacacttcaagggccgtctgacttag 16215102  T
Q  285 ctcaccaatggacgccacactctttacgggcaggcttcagttcctgaca-aaagcatcgagggccaccggactaagccgtcgacgagcgcctttg 378  Q
     ||| ||| | ||||||||||||||  |||| ||||| | ||||||||| ||  |||||||||||   |||||||||||||||||||||||||||    
T  16215101 atcatcaacgaacgccacactctttgtgggcgggctttaattcctgacacaacacatcgagggccgttggactaagccgtcgacgagcgcctttg 16215007  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 376
Target Start/End: Original strand, 17715493 - 17715585
Alignment:
Q  285 ctcaccaatggacgccacactctttacgggcaggcttcagttcctgacaaaa-gcatcgagggccaccggactaagccgtcgacgagcgcctt 376  Q
    |||| ||||||||||||||||||||  ||||  |||| || |||| ||| || |||||||||||| || |||||||  |||||||||||||||    
T  17715493 ctcatcaatggacgccacactctttgtgggcgagctttagctcctaacacaacgcatcgagggcctccagactaagttgtcgacgagcgcctt 17715585  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 18774478 - 18774367
Alignment:
Q  261 catttcaagggtcgtctgacttagctcaccaatggacgccacactctttacgggcaggcttcagttcctgaca-aaagcatcgagggccaccggactaag 359  Q
    |||||||||| |||||  |||||||||| ||   || |||||||||||| ||||| ||||||||||||||||| || |||| ||||||||||||||||||    
T  18774478 catttcaaggatcgtccaacttagctcatcagcagatgccacactctttgcgggcgggcttcagttcctgacacaacgcattgagggccaccggactaag 18774379  T
Q  360 ccgtcgacgagc 371  Q
     |||||||||||    
T  18774378 tcgtcgacgagc 18774367  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 378
Target Start/End: Original strand, 4781096 - 4781211
Alignment:
Q  264 ttcaagggtcgtctgacttagctcaccaatggacgccacactctttacgggcaggcttcagttcctgaca-aaagcatcgagggccaccggactaagccg 362  Q
    ||||||||||||| ||||||| ||| |||||||||||||||| ||| |  |||| ||||| ||||||||| ||  ||| ||||||| || ||||||| ||    
T  4781096 ttcaagggtcgtccgacttagatcaacaatggacgccacactatttgcaagcagacttcaattcctgacacaactcattgagggccgccagactaagtcg 4781195  T
Q  363 tcgacgagcgcctttg 378  Q
    ||||||||||||||||    
T  4781196 tcgacgagcgcctttg 4781211  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 378
Target Start/End: Original strand, 4813527 - 4813642
Alignment:
Q  264 ttcaagggtcgtctgacttagctcaccaatggacgccacactctttacgggcaggcttcagttcctgaca-aaagcatcgagggccaccggactaagccg 362  Q
    ||||||||||||| ||||||| ||| |||||||||||||||| ||| |  |||| ||||| ||||||||| ||  ||| ||||||| || ||||||| ||    
T  4813527 ttcaagggtcgtccgacttagatcaacaatggacgccacactatttgcaagcagacttcaattcctgacacaactcattgagggccgccagactaagtcg 4813626  T
Q  363 tcgacgagcgcctttg 378  Q
    ||||||||||||||||    
T  4813627 tcgacgagcgcctttg 4813642  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 378
Target Start/End: Complemental strand, 23629489 - 23629390
Alignment:
Q  278 gacttagctcaccaatggacgccacactctttacgggcaggcttcagttcctgacaaaa-gcatcgagggccaccggactaagccgtcgacgagcgcctt 376  Q
    ||||||||||| ||| |||| ||||||||||| | |||  | |||||||||| ||| || |||||||||||| | |||||||| |||||||| |||||||    
T  23629489 gacttagctcaacaacggacaccacactctttgcaggc--gtttcagttcctaacacaacgcatcgagggccgcaggactaagtcgtcgacgcgcgcctt 23629392  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 1979450 - 1979379
Alignment:
Q  185 attaagtgccaactactcctactaactcaaagtcagacgccatcatttgcagacggaatcaaagcttcccaa 256  Q
    ||||| ||||||||| | | |||||||||||||| | |||||||| | |  |||||||||||||||||||||    
T  1979450 attaaatgccaactattgccactaactcaaagtcgggcgccatcactagtggacggaatcaaagcttcccaa 1979379  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 11369947 - 11369995
Alignment:
Q  16 ctttgatgatgtataagtaaatgctttacaagggcattgtgcccaataa 64  Q
    |||||||| |||||||| |||||||| |||| ||||||||||| |||||    
T  11369947 ctttgatgttgtataagcaaatgcttaacaaaggcattgtgccgaataa 11369995  T

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