View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2220_low_21 (Length: 353)
Name: NF2220_low_21
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 44154296 - 44154520
Alignment:
| Q |
9 |
taatacttccgtagaaatagtggaaatcatcaggggtcatgtatttgatggagtttgacttgtctttgaacacataatattctccttctactgttactgc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44154296 |
taatacttccgtagaaatagtggaaatcatcaggggtcatgtatttgatggagtttgacttgtctttgaacacataatattctccttctactgttactgc |
44154395 |
T |
|
| Q |
109 |
atcattagcatccatcaatc--------aatcaaacattaattaccaacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaa |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44154396 |
atcattagcatccatcaatcaatcaattaatcaaacattaattaccaacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaa |
44154495 |
T |
|
| Q |
201 |
atcagaaagaacatccttgaattca |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
44154496 |
atcagaaagaacatccttgaattca |
44154520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 40899021 - 40899237
Alignment:
| Q |
9 |
taatacttccgtagaaatagtggaaatcatcaggggtcatgtatttgatggagtttgacttgtctttgaacacataatattctccttctactgttactgc |
108 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
40899021 |
taatacttcggtagaaatagtggaaatcatcaggggtcatgcatttgatggagtttgatttgtctttgaacacataatattctccttttactgttacagc |
40899120 |
T |
|
| Q |
109 |
atcattagcatccatcaatcaatcaaacattaattaccaacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaa |
208 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40899121 |
atcgttagcatccatcaatcaatcaaaaattaattaccaacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaa |
40899220 |
T |
|
| Q |
209 |
gaacatccttgaattca |
225 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
40899221 |
gaacatccttgaattca |
40899237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 253 - 339
Target Start/End: Original strand, 44154548 - 44154634
Alignment:
| Q |
253 |
gcgtgatgaaacattaacaaatgaaatatgccagcaagaagagtagtaatactttcataatcaaagccataatctgctgatttgggt |
339 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44154548 |
gcgtgatgaaacattaaaaaatgaaatatgccagcaagaagagtagtaatactttcataatcaaagccataatctgatgatttgggt |
44154634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 40899265 - 40899342
Alignment:
| Q |
253 |
gcgtgatgaaacattaacaaatgaaatatgccagcaagaagagtagtaatactttcataatcaaagccataatctgct |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40899265 |
gcgtgatgaaacattaacaaatgaaatatgccagcaagaagagtagtaatactttcataatcaaagccataatctgct |
40899342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 40893829 - 40893762
Alignment:
| Q |
146 |
caacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaaca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||| |||| |
|
|
| T |
40893829 |
caacaacaacacattcaaaaatcataattaaaccatctaaactaaaacaaatgaaatcagaaacaaca |
40893762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 44154258 - 44154303
Alignment:
| Q |
261 |
aaacattaacaaatgaaatatgccagcaagaagagtagtaatactt |
306 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
44154258 |
aaacattaacaaatgaaataagtcagaaagaagagtagtaatactt |
44154303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 40898983 - 40899028
Alignment:
| Q |
261 |
aaacattaacaaatgaaatatgccagcaagaagagtagtaatactt |
306 |
Q |
| |
|
|||||||||||| ||||||| | ||| ||||||||||||||||||| |
|
|
| T |
40898983 |
aaacattaacaactgaaataagtcagaaagaagagtagtaatactt |
40899028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University