View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_low_25 (Length: 319)
Name: NF2220_low_25
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_low_25 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 20012862 - 20013180
Alignment:
| Q |
1 |
aaatcatgattttgcatgaaatccacatattatcatttgaaatctctatcttgctgcacatcattctttactctctgttgattatctgcttatgatcatc |
100 |
Q |
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| T |
20012862 |
aaatcgtgattttgcataaaatccacatattatcatttgaaaacactatcttgctgcacatcattctttactctctgttgattatctgcgtatgatcatc |
20012961 |
T |
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| Q |
101 |
atgttgcacttgcaggtgttagatatgcttgaagatgcttgtgaatcattgctggatagcattttggcagaaaataaacatatacaagaatcctaatacc |
200 |
Q |
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| T |
20012962 |
atgttgcacttgcaggtgttagatatgcttgaagatgcttgtgaatcattgctggatagcattttggcagaaaataaacatatacaagaatcctaacacc |
20013061 |
T |
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| Q |
201 |
ttttaatagccggaagatccaatcttgggattaagctgtagaggttggcggttttcatggatgttagagtaccttgttgtttcattgtccgaaacccatg |
300 |
Q |
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| T |
20013062 |
ttttaatagccggaagatccaatcttgggattaagctgtagaggttggcggttttcatggatgttagagtaccttgttgtttcattgtccgaaatccatg |
20013161 |
T |
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| Q |
301 |
gcttctttatattgggaag |
319 |
Q |
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|||||| |||||| ||||| |
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| T |
20013162 |
gcttctatatattaggaag |
20013180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 20022057 - 20022099
Alignment:
| Q |
113 |
caggtgttagatatgcttgaagatgcttgtgaatcattgctgg |
155 |
Q |
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| T |
20022057 |
caggtgttagatttgcttgaagatgcttgttaatcattgctgg |
20022099 |
T |
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