View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_low_26 (Length: 305)
Name: NF2220_low_26
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_low_26 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0040 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 1623956 - 1623664
Alignment:
| Q |
10 |
ataaaaaagaagtaaagaacacacgttggtctttgagtgccacgtaaacatacagttgaagaaaatggttacacatgtcatgagactcaaaatcaaaaca |
109 |
Q |
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| T |
1623956 |
ataaaaaagaagtaaagaacac---ttggtcattgagtgccacgtaaacatacagttgaagaaaatggttacacatgtcatgagactcaaaatcaaaaca |
1623860 |
T |
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| Q |
110 |
gcaacagtactacgatcctcactcacacccgaagtcatgtcaaatcgattctttccaaatcccatgcccgaattcatacccgaatcaacaccttcaaccc |
209 |
Q |
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| T |
1623859 |
gcaacagtactacgatcctcactcacacccgaagccatgtcaaatcgattctttcccaatcccatgccagaattcatacccgaatcaacaccttcaaccc |
1623760 |
T |
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| Q |
210 |
aacaggaactccaagaagcagtcaccgtcacaacgggcggtgactcactcctcaacctcctcgctatgcctcatgctcccctctcccagcgcctca |
305 |
Q |
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| T |
1623759 |
aacaggaactccaagaagcagtcaccgtcacaacgggcggtgactcactcctcaacctcctcgccatgcctcatgctccactctcccagcgtctca |
1623664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 160 - 288
Target Start/End: Original strand, 60035 - 60163
Alignment:
| Q |
160 |
ctttccaaatcccatgcccgaattcatacccgaatcaacaccttcaacccaacaggaactccaagaagcagtcaccgtcacaacgggcggtgactcactc |
259 |
Q |
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| T |
60035 |
ctttcccaatcccatgccagaattcatacccgaatcaacaccttcaacccaacaggaactccaagaagcagtcaccgtcacaacgggcggtgactcactc |
60134 |
T |
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| Q |
260 |
ctcaacctcctcgctatgcctcatgctcc |
288 |
Q |
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| T |
60135 |
ctcaacctcctcgccatgcctcatgctcc |
60163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 59886 - 60008
Alignment:
| Q |
36 |
tggtctttgagtgccacgtaaacatacagttgaagaaaatggttacaca---tgtcatgagactcaaaatcaaaacagcaacagtactacgatcctcact |
132 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| |||||||||||||||| |
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| T |
59886 |
tggtctttgaatgccacgtaaacatacagttgaagaaaatggttacacatgttgttagaagactcaaaatcaaaacagcaacaatactacgatcctcact |
59985 |
T |
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| Q |
133 |
cacacccgaagtcatgtcaaatc |
155 |
Q |
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| T |
59986 |
ctcacccgaaaccatgtcaaatc |
60008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 60003 - 60033
Alignment:
| Q |
165 |
caaatcccatgcccgaattcatacccgaatc |
195 |
Q |
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| T |
60003 |
caaatcccatgcccgaattcatacccgaatc |
60033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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