View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2220_low_28 (Length: 297)
Name: NF2220_low_28
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 75 - 283
Target Start/End: Complemental strand, 44766476 - 44766268
Alignment:
| Q |
75 |
tcggaagatgaagattggggaaaaaatgcggtattggagaatgttgttgatgataatgatgatgaagatatggaactggaggaagaaaatgaagttgtag |
174 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44766476 |
tcggaagatgaagattggggaaaaaatgctgtattggagaatgttgtggatgataatgatgatgaagatatggaactggaggaagaaaatgaagttgtag |
44766377 |
T |
|
| Q |
175 |
agagtgctaaaggaaagaatagtaataaggttgagccgaaaaagcggaaactaggcggaggagcaaaaatggagccgatgaaaaagagcaagagtggaaa |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44766376 |
agagtgctaaaggaaagaatagtaataaggttgagccgaaaaagcggaaactaggcggaggagcaaaaatggagccgatgaaaaagagcaagagtggaaa |
44766277 |
T |
|
| Q |
275 |
tgaagttaa |
283 |
Q |
| |
|
||||||||| |
|
|
| T |
44766276 |
tgaagttaa |
44766268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University