View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2220_low_30 (Length: 264)

Name: NF2220_low_30
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2220_low_30
NF2220_low_30
[»] chr3 (11 HSPs)
chr3 (59-166)||(4826595-4826702)
chr3 (52-183)||(4856660-4856792)
chr3 (52-183)||(4878395-4878527)
chr3 (63-152)||(4837498-4837587)
chr3 (56-150)||(4842040-4842138)
chr3 (57-183)||(4846056-4846185)
chr3 (101-163)||(4835390-4835452)
chr3 (58-152)||(4842950-4843050)
chr3 (58-152)||(4868646-4868746)
chr3 (120-183)||(4860974-4861033)
chr3 (120-183)||(4880981-4881040)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 4826595 - 4826702
Alignment:
Q  59 ccatgtatttgctactagttgatgatcagtacctatcgttcaattttccacacaaaaagaccatttagtattattggctctatctctccacttggttgca 158  Q
    |||||||||||||||| |||||||||||||||||||| ||  ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  4826595 ccatgtatttgctacttgttgatgatcagtacctatcctttcattttccacacaacaagaccatttagtattattggctctatctctccacttgtttgca 4826694  T
Q  159 caccaata 166  Q
    ||||||||    
T  4826695 caccaata 4826702  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 52 - 183
Target Start/End: Original strand, 4856660 - 4856792
Alignment:
Q  52 gttccttccatgtatttgctactagttgatgatcagt----acctatcgttcaattttccacacaaaaagaccatttagtattattggctctatctctcc 147  Q
    |||||||||||||||||||||||||||||||||||||    ||||||| || |||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  4856660 gttccttccatgtatttgctactagttgatgatcagtccctacctatcctttaattttccacacaacaagaccattcagtaatattggctctatctctcc 4856759  T
Q  148 acttggttgcacaccaatatggtttagctgaaaaaa 183  Q
    ||||| |||| ||||   ||||||||||||||||||    
T  4856760 acttgtttgcccacc---atggtttagctgaaaaaa 4856792  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 52 - 183
Target Start/End: Original strand, 4878395 - 4878527
Alignment:
Q  52 gttccttccatgtatttgctactagttgatgatcagt----acctatcgttcaattttccacacaaaaagaccatttagtattattggctctatctctcc 147  Q
    |||||||||||||||||||||||||||||||||||||    ||||||| || |||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  4878395 gttccttccatgtatttgctactagttgatgatcagtccctacctatcctttaattttccacacaacaagaccattcagtaatattggctctatctctcc 4878494  T
Q  148 acttggttgcacaccaatatggtttagctgaaaaaa 183  Q
    ||||| |||| ||||   ||||||||||||||||||    
T  4878495 acttgtttgcccacc---atggtttagctgaaaaaa 4878527  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 4837498 - 4837587
Alignment:
Q  63 gtatttgctactagttgatgatcagtacctatcgttcaattttccacacaaaaagaccatttagtattattggctctatctctccacttg 152  Q
    |||||||||| |  ||||||||||||| ||||| ||  ||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  4837498 gtatttgctagttattgatgatcagtagctatcctttcattttccacacaacaagaccatttagtattattggctttatctctccacttg 4837587  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 4842040 - 4842138
Alignment:
Q  56 cttccatgtatttgctactagttgatgatcagtacctatcgttca----attttccacacaaaaagaccatttagtattattggctctatctctccact 150  Q
    ||||||||||||||||||||||||||||||| || ||||| || |    |||||||| |||  ||||||||||||||||||||||||||||| ||||||    
T  4842040 cttccatgtatttgctactagttgatgatcattaactatccttaatttcattttccatacagcaagaccatttagtattattggctctatctttccact 4842138  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 183
Target Start/End: Original strand, 4846056 - 4846185
Alignment:
Q  57 ttccatgtatttgctactagttgatgatcagta----cctatcgttcaattttccacacaaaaagaccatttagtattattggctctatctctccacttg 152  Q
    |||||||||||||| |||||||||||||  |||    |||||| || |||||||||||||| ||||||||| |||| |||||||||||| ||||||||||    
T  4846056 ttccatgtatttgcaactagttgatgattggtagctacctatcctttaattttccacacaacaagaccattcagtaatattggctctatatctccacttg 4846155  T
Q  153 gttgcacaccaatatggtttagctgaaaaaa 183  Q
     |||| || ||   |||||||||||||||||    
T  4846156 tttgccca-caccgtggtttagctgaaaaaa 4846185  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 4835390 - 4835452
Alignment:
Q  101 attttccacacaaaaagaccatttagtattattggctctatctctccacttggttgcacacca 163  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||    
T  4835390 attttccacacaacaagaccatttagtattattggctttatctctccgcttgtttgcacacca 4835452  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 4842950 - 4843050
Alignment:
Q  58 tccatgtatttgctactagttgatgatcagtacctatcgttcaattttccacacaaaaagacca------tttagtattattggctctatctctccactt 151  Q
    ||||||||||||||||||||||||||||| || ||||| ||  |||||||| ||||  ||||||      |||||||||||| |||||||||||||||||    
T  4842950 tccatgtatttgctactagttgatgatcactaactatcctttcattttccatacaactagaccatttttttttagtattatttgctctatctctccactt 4843049  T
Q  152 g 152  Q
    |    
T  4843050 g 4843050  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 4868646 - 4868746
Alignment:
Q  58 tccatgtatttgctactagttgatgatcagtacctatcgttcaattttccacacaaaaagacca------tttagtattattggctctatctctccactt 151  Q
    ||||||||||||||||||||||||||||| || ||||| ||  |||||||| ||||  ||||||      |||||||||||| |||||||||||||||||    
T  4868646 tccatgtatttgctactagttgatgatcactaactatcctttcattttccatacaactagaccatttttttttagtattatttgctctatctctccactt 4868745  T
Q  152 g 152  Q
    |    
T  4868746 g 4868746  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 4860974 - 4861033
Alignment:
Q  120 catttagtattattggctctatctctccacttggttgcacaccaatatggtttagctgaaaaaa 183  Q
    ||||||||||||||||||||||||||||||||| |||| |||    |||||||| |||||||||    
T  4860974 catttagtattattggctctatctctccacttgtttgcgcac----atggtttacctgaaaaaa 4861033  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 4880981 - 4881040
Alignment:
Q  120 catttagtattattggctctatctctccacttggttgcacaccaatatggtttagctgaaaaaa 183  Q
    ||||||||||||||||||||||||||||||||| |||| |||    |||||||| |||||||||    
T  4880981 catttagtattattggctctatctctccacttgtttgcgcac----atggtttacctgaaaaaa 4881040  T

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