View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2220_low_35 (Length: 245)

Name: NF2220_low_35
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2220_low_35
NF2220_low_35
[»] chr7 (10 HSPs)
chr7 (1-119)||(48140061-48140179)
chr7 (182-229)||(48139928-48139975)
chr7 (4-43)||(21568738-21568777)
chr7 (4-46)||(45806587-45806629)
chr7 (4-43)||(9210549-9210588)
chr7 (4-43)||(46078068-46078107)
chr7 (3-41)||(17983710-17983748)
chr7 (55-97)||(18865205-18865247)
chr7 (4-41)||(420283-420320)
chr7 (4-32)||(31247679-31247707)
[»] chr8 (6 HSPs)
chr8 (4-43)||(38750279-38750318)
chr8 (5-97)||(14956406-14956492)
chr8 (4-43)||(1058184-1058223)
chr8 (5-43)||(38353271-38353309)
chr8 (4-43)||(32975981-32976020)
chr8 (4-41)||(16825647-16825684)
[»] chr4 (9 HSPs)
chr4 (4-41)||(33587064-33587101)
chr4 (4-43)||(43505877-43505916)
chr4 (6-37)||(31076498-31076529)
chr4 (4-43)||(41336682-41336721)
chr4 (7-41)||(54425968-54426002)
chr4 (4-41)||(54069527-54069564)
chr4 (4-32)||(27330151-27330179)
chr4 (15-47)||(40831156-40831188)
chr4 (4-36)||(45935330-45935362)
[»] chr3 (8 HSPs)
chr3 (8-47)||(5331211-5331250)
chr3 (4-46)||(20880395-20880437)
chr3 (8-46)||(29520592-29520630)
chr3 (7-43)||(1508694-1508730)
chr3 (6-43)||(20170444-20170481)
chr3 (6-34)||(5331372-5331400)
chr3 (6-34)||(29520442-29520470)
chr3 (55-99)||(30365686-30365730)
[»] chr2 (4 HSPs)
chr2 (4-43)||(32592508-32592547)
chr2 (5-43)||(42659262-42659300)
chr2 (4-43)||(26201949-26201988)
chr2 (4-42)||(15305579-15305617)
[»] chr6 (6 HSPs)
chr6 (4-46)||(18076114-18076156)
chr6 (4-37)||(30536668-30536701)
chr6 (8-43)||(29754193-29754228)
chr6 (55-97)||(24626168-24626210)
chr6 (15-43)||(6538438-6538466)
chr6 (7-43)||(35071203-35071239)
[»] chr5 (6 HSPs)
chr5 (5-43)||(7999127-7999165)
chr5 (4-41)||(42500335-42500372)
chr5 (4-43)||(16458088-16458127)
chr5 (7-37)||(15015778-15015808)
chr5 (4-46)||(29925759-29925801)
chr5 (9-37)||(26005353-26005381)
[»] chr1 (9 HSPs)
chr1 (3-43)||(5741583-5741623)
chr1 (6-38)||(32491479-32491511)
chr1 (4-43)||(33541818-33541857)
chr1 (4-43)||(42174778-42174817)
chr1 (4-41)||(37473322-37473359)
chr1 (2-43)||(42391287-42391328)
chr1 (3-43)||(5709483-5709523)
chr1 (3-43)||(5720902-5720942)
chr1 (4-36)||(27976523-27976555)
[»] scaffold0012 (1 HSPs)
scaffold0012 (8-43)||(207695-207730)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 48140179 - 48140061
Alignment:
Q  1 tgttataaaaatagcttatgcaagcttatacataagcgcttattatcctcctattaagcgtttgtgctataatctgtatataagttgtttatccaaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48140179 tgttataaaaatagcttatgcaagcttatacataagcgcttattatcctcctattaagcgtttgtgctataatctgtatataagttgtttatccaaaaat 48140080  T
Q  101 acattattcatctcctaat 119  Q
    |||||||||||||||||||    
T  48140079 acattattcatctcctaat 48140061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 48139975 - 48139928
Alignment:
Q  182 ttaaatattcaaatgatccaccttaattgaatcaaaaggattagaaaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48139975 ttaaatattcaaatgatccaccttaattgaatcaaaaggattagaaaa 48139928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 21568738 - 21568777
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  21568738 tataaaaatagcttatgcaagcttatacataagtgcttat 21568777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 45806587 - 45806629
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttattat 46  Q
    |||||| |||||||||||||||||||||||||| |||||||||    
T  45806587 tataaacatagcttatgcaagcttatacataagtgcttattat 45806629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 9210588 - 9210549
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  9210588 tataaaagtagcttatgcaagcttatacataagcgattat 9210549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 46078107 - 46078068
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  46078107 tataaaaataacttatgtaagcttatacataagcgcttat 46078068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 17983710 - 17983748
Alignment:
Q  3 ttataaaaatagcttatgcaagcttatacataagcgctt 41  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  17983710 ttattaaaatagcttatgtaagcttatacataagcgctt 17983748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 18865205 - 18865247
Alignment:
Q  55 taagcgtttgtgctataatctgtatataagttgtttatccaaa 97  Q
    |||||||||||||||||| ||| | ||||||||||||||||||    
T  18865205 taagcgtttgtgctataagctgcaaataagttgtttatccaaa 18865247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 420320 - 420283
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgctt 41  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  420320 tataaacatagcttatgcaagcttatacataaacgctt 420283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 31247679 - 31247707
Alignment:
Q  4 tataaaaatagcttatgcaagcttataca 32  Q
    |||||||||||||||||||||||||||||    
T  31247679 tataaaaatagcttatgcaagcttataca 31247707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 38750318 - 38750279
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38750318 tataaaaatagcttatgcaagcttatacataagcgcttat 38750279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 14956406 - 14956492
Alignment:
Q  5 ataaaaatagcttatgcaagcttatacataagcgcttattatcctcctattaagcgtttgtgctataatctgtatataagttgtttatccaaa 97  Q
    |||||||||||||||||||||||||||||||| |||||      || |  |||||| ||||||||||| ||| | ||||||||||||||||||    
T  14956406 ataaaaatagcttatgcaagcttatacataagtgctta------tcatgataagcgattgtgctataagctgcaaataagttgtttatccaaa 14956492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 1058184 - 1058223
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  1058184 tataaaaatagcttatgtaagcttatacataagcgcttat 1058223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 38353309 - 38353271
Alignment:
Q  5 ataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  38353309 ataaaaatagcttatgcaagcttatacataagcgattat 38353271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 32976020 - 32975981
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    ||||||||||||||||||||||||||| |||||| |||||    
T  32976020 tataaaaatagcttatgcaagcttatatataagcacttat 32975981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 16825647 - 16825684
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgctt 41  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  16825647 tataagaatagcttatgcaaggttatacataagcgctt 16825684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 33587064 - 33587101
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgctt 41  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33587064 tataaaaatagcttatgcaagcttatacataagcgctt 33587101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 43505916 - 43505877
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  43505916 tataaaaatagcttatgcaagcttatacataagtgcttat 43505877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 31076498 - 31076529
Alignment:
Q  6 taaaaatagcttatgcaagcttatacataagc 37  Q
    ||||||||||||||||||||||||||||||||    
T  31076498 taaaaatagcttatgcaagcttatacataagc 31076529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 41336721 - 41336682
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  41336721 tataaaaatagcttatgcaagcctatacataagtgcttat 41336682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 54426002 - 54425968
Alignment:
Q  7 aaaaatagcttatgcaagcttatacataagcgctt 41  Q
    |||| ||||||||||||||||||||||||||||||    
T  54426002 aaaagtagcttatgcaagcttatacataagcgctt 54425968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 54069527 - 54069564
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgctt 41  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  54069527 tataaaaatagcatatgcaagcttatacataagtgctt 54069564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 27330151 - 27330179
Alignment:
Q  4 tataaaaatagcttatgcaagcttataca 32  Q
    |||||||||||||||||||||||||||||    
T  27330151 tataaaaatagcttatgcaagcttataca 27330179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 40831156 - 40831188
Alignment:
Q  15 cttatgcaagcttatacataagcgcttattatc 47  Q
    ||||||||||||||| |||||||||||||||||    
T  40831156 cttatgcaagcttattcataagcgcttattatc 40831188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 45935330 - 45935362
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataag 36  Q
    |||||| ||||||||||||||||||||||||||    
T  45935330 tataaacatagcttatgcaagcttatacataag 45935362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 5331250 - 5331211
Alignment:
Q  8 aaaatagcttatgcaagcttatacataagcgcttattatc 47  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  5331250 aaaatagcttatgcaagcttatacataagtgcttattatc 5331211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 20880437 - 20880395
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttattat 46  Q
    ||||||||||||||||| |||||||||||||||| ||||||||    
T  20880437 tataaaaatagcttatgtaagcttatacataagcacttattat 20880395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 29520592 - 29520630
Alignment:
Q  8 aaaatagcttatgcaagcttatacataagcgcttattat 46  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  29520592 aaaatagcttatgcaagcttatacataagtgcttattat 29520630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 1508694 - 1508730
Alignment:
Q  7 aaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    |||||||| ||||||||||||||||||||||||||||    
T  1508694 aaaaatagtttatgcaagcttatacataagcgcttat 1508730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 20170481 - 20170444
Alignment:
Q  6 taaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  20170481 taaaaatagcttgtgcaagctgatacataagcgcttat 20170444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 5331400 - 5331372
Alignment:
Q  6 taaaaatagcttatgcaagcttatacata 34  Q
    |||||||||||||||||||||||||||||    
T  5331400 taaaaatagcttatgcaagcttatacata 5331372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 29520442 - 29520470
Alignment:
Q  6 taaaaatagcttatgcaagcttatacata 34  Q
    |||||||||||||||||||||||||||||    
T  29520442 taaaaatagcttatgcaagcttatacata 29520470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 30365686 - 30365730
Alignment:
Q  55 taagcgtttgtgctataatctgtatataagttgtttatccaaaaa 99  Q
    |||| ||||||||||||| || || ||||||||||||||||||||    
T  30365686 taagtgtttgtgctataagctataaataagttgtttatccaaaaa 30365730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 32592547 - 32592508
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  32592547 tataaaaatagtttatgcaagcttatacataagcgcttat 32592508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 42659262 - 42659300
Alignment:
Q  5 ataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  42659262 ataaaaatagcttatgtaagcttatacataagcgcttat 42659300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 26201988 - 26201949
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  26201988 tataaaaatagcttatgcaagcttatatataagggcttat 26201949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 15305617 - 15305579
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgctta 42  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  15305617 tataaaaatagcttatgcaagcttatacacaagcactta 15305579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 18076156 - 18076114
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttattat 46  Q
    |||||||||| |||||||||||||||||||||| |||||||||    
T  18076156 tataaaaataacttatgcaagcttatacataagtgcttattat 18076114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 30536668 - 30536701
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagc 37  Q
    ||||||||||||||||||||||||||||||||||    
T  30536668 tataaaaatagcttatgcaagcttatacataagc 30536701  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 29754193 - 29754228
Alignment:
Q  8 aaaatagcttatgcaagcttatacataagcgcttat 43  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29754193 aaaatagcttatgcaagctaatacataagcgcttat 29754228  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 24626210 - 24626168
Alignment:
Q  55 taagcgtttgtgctataatctgtatataagttgtttatccaaa 97  Q
    ||||| |||||||||||| ||||| ||||||||||||||||||    
T  24626210 taagcatttgtgctataagctgtaaataagttgtttatccaaa 24626168  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 6538466 - 6538438
Alignment:
Q  15 cttatgcaagcttatacataagcgcttat 43  Q
    |||||||||||||||||||||||||||||    
T  6538466 cttatgcaagcttatacataagcgcttat 6538438  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 35071203 - 35071239
Alignment:
Q  7 aaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    |||||||||||||||||||||||| | ||||||||||    
T  35071203 aaaaatagcttatgcaagcttatatacaagcgcttat 35071239  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 7999165 - 7999127
Alignment:
Q  5 ataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  7999165 ataaaaataacttatgcaagcttatacataagcgcttat 7999127  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 42500335 - 42500372
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgctt 41  Q
    |||||||||||||||||||||||||||||| |||||||    
T  42500335 tataaaaatagcttatgcaagcttatacattagcgctt 42500372  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 16458088 - 16458127
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    ||||||||||||||||||||||||||| |||||| |||||    
T  16458088 tataaaaatagcttatgcaagcttatatataagcacttat 16458127  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 15015808 - 15015778
Alignment:
Q  7 aaaaatagcttatgcaagcttatacataagc 37  Q
    |||||||||||||||||||||||||||||||    
T  15015808 aaaaatagcttatgcaagcttatacataagc 15015778  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 29925801 - 29925759
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttattat 46  Q
    |||||||||||||||||||||| ||||| |||||| |||||||    
T  29925801 tataaaaatagcttatgcaagcatatacttaagcgtttattat 29925759  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 26005353 - 26005381
Alignment:
Q  9 aaatagcttatgcaagcttatacataagc 37  Q
    |||||||||||||||||||||||||||||    
T  26005353 aaatagcttatgcaagcttatacataagc 26005381  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 5741623 - 5741583
Alignment:
Q  3 ttataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  5741623 ttataaaaatagcttatgtaaacttatacataagcgcttat 5741583  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 32491511 - 32491479
Alignment:
Q  6 taaaaatagcttatgcaagcttatacataagcg 38  Q
    |||||||||||||||||||||||||||||||||    
T  32491511 taaaaatagcttatgcaagcttatacataagcg 32491479  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 33541818 - 33541857
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  33541818 tataaaaatatcttattcaagcttatacataagcgcttat 33541857  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 42174817 - 42174778
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  42174817 tataaaaatagcctatgcaagcttatacataagcccttat 42174778  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 37473359 - 37473322
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataagcgctt 41  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  37473359 tataaaaatagcttatgtaagcttatacataagtgctt 37473322  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 42391328 - 42391287
Alignment:
Q  2 gttataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    ||||||||||||| ||| |||||||||||||||||| |||||    
T  42391328 gttataaaaatagtttaagcaagcttatacataagcacttat 42391287  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 5709523 - 5709483
Alignment:
Q  3 ttataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    |||||||||||||| || ||||| |||||||||||||||||    
T  5709523 ttataaaaatagctaatacaagcatatacataagcgcttat 5709483  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 5720942 - 5720902
Alignment:
Q  3 ttataaaaatagcttatgcaagcttatacataagcgcttat 43  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  5720942 ttataaaaatagcttacgtaaacttatacataagcgcttat 5720902  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 27976555 - 27976523
Alignment:
Q  4 tataaaaatagcttatgcaagcttatacataag 36  Q
    ||||||||||||||||| |||||||||||||||    
T  27976555 tataaaaatagcttatgtaagcttatacataag 27976523  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 207695 - 207730
Alignment:
Q  8 aaaatagcttatgcaagcttatacataagcgcttat 43  Q
    ||||||||||||||||||||||||||||| ||||||    
T  207695 aaaatagcttatgcaagcttatacataagtgcttat 207730  T

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