View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_low_4 (Length: 598)
Name: NF2220_low_4
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 158 - 582
Target Start/End: Original strand, 20898612 - 20899033
Alignment:
| Q |
158 |
ataactaactgttagattgataatttggttgttaatgattatattttacttttacagataagaaaactttggcatgaataaaagcatttacctggagtcc |
257 |
Q |
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|||| ||||||||| |||||||||||||||||| |||||||| |||||||||| |||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
20898612 |
ataattaactgttaaattgataatttggttgtttatgattattttttacttttgcagataagaaaactttggtccgaagaaaagcatttacctggagtcc |
20898711 |
T |
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| Q |
258 |
cccttgatgacattccagatctgaagtcatgtcttctcaatcaacaatttcaagtaattaattgttgcatctctcggaaaaggtgccatatcattgcaag |
357 |
Q |
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| T |
20898712 |
cccttgatgacattccagatctgaagtcatgtcttctcaatcaacaatttcaagtaattaactgctgcatctctcggaaaaggcgccatatcattgcaag |
20898811 |
T |
|
| Q |
358 |
tgaatccctggactctatgttgatggaagaaaattcaaacaatacaccgaaatcaacaaactgttatgatggtacttctgcaagtcgcttattatatgct |
457 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20898812 |
tgaatccctggactatatgttgatggaagcaaattcaaacaatacaccggaatcaacaaactgttgtgatggtacttctgcaagtcgcttattatatgct |
20898911 |
T |
|
| Q |
458 |
cgattaagtactgaagagcttgttcttcgacttggtgctcattgtccatccggaaaccttaccttattagaaacaactggcgaggctgcatactctccta |
557 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||||||| |
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| T |
20898912 |
cgattaagtactggagagcttgttcttcgacttggtgctcattgtccatccggaaaccttacgttattgga---aactggcgagcctgcatactctccta |
20899008 |
T |
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| Q |
558 |
tcagccaggtttgagtttgacatat |
582 |
Q |
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||| |||||||||||||| |||||| |
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| T |
20899009 |
tcacccaggtttgagtttcacatat |
20899033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 243 - 382
Target Start/End: Original strand, 40700050 - 40700189
Alignment:
| Q |
243 |
atttacctggagtcccccttgatgacattccagatctgaagtcatgtcttctcaatcaacaatttcaagtaattaattgttgcatctctcggaaaaggtg |
342 |
Q |
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| T |
40700050 |
atttaccaggagtcccgcagaatgatattccagatctgaaaacatgtcttctgtatcaacactttcaagtaattaattgttgtatttctcgaaagaggct |
40700149 |
T |
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| Q |
343 |
ccatatcattgcaagtgaatccctggactctatgttgatg |
382 |
Q |
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| T |
40700150 |
ccgtatcattgcgactgaatctctagagtctatgatgatg |
40700189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 40718376 - 40718454
Alignment:
| Q |
243 |
atttacctggagtcccccttgatgacattccagatctgaagtcatgtcttctcaatcaacaatttcaagtaattaattg |
321 |
Q |
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| T |
40718376 |
atttacctggattcctgcataatgatattccagatttgaaaacatgtcttctgtatcaacaatttcaagtaattaattg |
40718454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 47333296 - 47333342
Alignment:
| Q |
1 |
attgataaccctttgatcaatcctgtggctattgatgctccatgttt |
47 |
Q |
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| T |
47333296 |
attgataaccctttgatcaatcctttggctattgatgctccaagttt |
47333342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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