View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_low_42 (Length: 235)
Name: NF2220_low_42
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 37261544 - 37261350
Alignment:
| Q |
26 |
tatatgtaacgagtacattacatatccaataaaaaattgcatgcatgaatgatcaggacgaagttaaacaatacataactaagtagtgatcagacatata |
125 |
Q |
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| T |
37261544 |
tatatgtaacgagtacattacatatccaataaaaaattgcatgcatgaatgatcaggacgaagttaaacaatacataactaagtagtgatcagacatata |
37261445 |
T |
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| Q |
126 |
catgatgaggatatataaaatcaaaagtagaagaagccagcgattgcagcagttgcagccgttcctgcgacggtggagaagtagacggtagaggc |
220 |
Q |
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| T |
37261444 |
catgatgaggatatataaaatcaaaagtagaagaagccagcgattgcagcagttgcagccgttcctgcgacggtggagaagtagacggtagaggc |
37261350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 37265321 - 37265123
Alignment:
| Q |
22 |
ttggtatatgtaacgagtacattacatatccaataaaaaattgcatgcatgaatgatcaggacgaagttaaacaatacataactaagtagtgatcagaca |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||||| ||| |
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| T |
37265321 |
ttggtatatgtaacgagtacattacatatccaataaaaaattacatgcatgaatgatcaggacgaagttaaactaaacatgactaagtagtgatcaaaca |
37265222 |
T |
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| Q |
122 |
tatacatgatgaggatatataaaatcaaaagtagaagaagccagcgattgcagcagttgcagccgttcctgcgacggtggagaagtagacggtagaggc |
220 |
Q |
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| T |
37265221 |
tatacatgatgaggatatataaaatcaaaagtagaagaagccagcgattgcagcagttgcagccgttcctgcgatggtggagaagtagacggtagaggc |
37265123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 75 - 220
Target Start/End: Complemental strand, 37277236 - 37277091
Alignment:
| Q |
75 |
tgatcaggacgaagttaaacaatacataactaagtagtgatcagacatatacatgatgaggatatataaaatcaaaagtagaagaagccagcgattgcag |
174 |
Q |
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| T |
37277236 |
tgatcaagacaaagttaagaaatacataactaagtagtgatcatgcatatacatgatgatgatatatataatcaaaagtagaagaagccagcgattgaag |
37277137 |
T |
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| Q |
175 |
cagttgcagccgttcctgcgacggtggagaagtagacggtagaggc |
220 |
Q |
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| T |
37277136 |
cagttacaactgttcctgcgatggaggagatgtagatggtagaggc |
37277091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 75 - 220
Target Start/End: Complemental strand, 37281070 - 37280925
Alignment:
| Q |
75 |
tgatcaggacgaagttaaacaatacataactaagtagtgatcagacatatacatgatgaggatatataaaatcaaaagtagaagaagccagcgattgcag |
174 |
Q |
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| T |
37281070 |
tgatcaggacaaagttatgaaatacataactaagtagtgatcatacatatatatgatgatattatatataatcaaaagtagaagaagccagcgactgcag |
37280971 |
T |
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| Q |
175 |
cagttgcagccgttcctgcgacggtggagaagtagacggtagaggc |
220 |
Q |
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| T |
37280970 |
cagttgcagctgttcctgcgacggcagagaagtagatgctagaggc |
37280925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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