View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_low_45 (Length: 207)
Name: NF2220_low_45
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 8840026 - 8839855
Alignment:
| Q |
18 |
cattcttcaccatattctcctccacctgatccaaaaacttctctatgtaaccaggaatctcaaacgacactccttctttctcatgaagaagaaaatgatc |
117 |
Q |
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| T |
8840026 |
cattcttcaccatattctcctccacctgatccaaaaacttctctatgtaaccaggaatctcaaacgacactccttctttctcatgcagaagaaaatgatc |
8839927 |
T |
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| Q |
118 |
aatgtcttctgaaaccttctcacagataggaggagacttcacagcctcaatggtttctgcatttccttcctt |
189 |
Q |
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| T |
8839926 |
aatgtcttctgaaaccttctcacagatagggggagacttcacagcctcaatggtttctgcatttccttcctt |
8839855 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 10627062 - 10627094
Alignment:
| Q |
106 |
aagaaaatgatcaatgtcttctgaaaccttctc |
138 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
10627062 |
aagaaattgatcaatgtcttctgaaaccttctc |
10627094 |
T |
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