View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2220_low_5 (Length: 543)

Name: NF2220_low_5
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2220_low_5
NF2220_low_5
[»] chr3 (5 HSPs)
chr3 (66-309)||(49016123-49016365)
chr3 (66-255)||(26250498-26250687)
chr3 (308-393)||(39666035-39666120)
chr3 (311-393)||(43615085-43615167)
chr3 (88-186)||(35492413-35492513)
[»] chr7 (5 HSPs)
chr7 (65-309)||(42011308-42011551)
chr7 (314-393)||(28211217-28211296)
chr7 (311-393)||(14648031-14648113)
chr7 (450-500)||(28211353-28211403)
chr7 (492-535)||(28211410-28211453)
[»] chr4 (11 HSPs)
chr4 (66-309)||(48512634-48512876)
chr4 (71-309)||(50499783-50500020)
chr4 (66-309)||(52489269-52489511)
chr4 (65-298)||(31417204-31417434)
chr4 (66-309)||(29819423-29819670)
chr4 (66-309)||(48474109-48474351)
chr4 (68-309)||(53409088-53409334)
chr4 (66-298)||(42477413-42477645)
chr4 (66-298)||(37385007-37385234)
chr4 (52-147)||(20718120-20718215)
chr4 (347-389)||(54804373-54804415)
[»] chr1 (10 HSPs)
chr1 (66-298)||(3154459-3154691)
chr1 (66-292)||(6850840-6851066)
chr1 (60-298)||(29920348-29920585)
chr1 (66-309)||(5055097-5055338)
chr1 (311-393)||(8142796-8142878)
chr1 (450-500)||(8142935-8142985)
chr1 (492-535)||(8142992-8143035)
chr1 (60-110)||(29919219-29919269)
chr1 (60-110)||(29920128-29920178)
chr1 (60-110)||(29920238-29920288)
[»] chr6 (2 HSPs)
chr6 (73-309)||(27336118-27336353)
chr6 (73-309)||(27396858-27397093)
[»] chr5 (6 HSPs)
chr5 (82-309)||(32771246-32771471)
chr5 (64-186)||(26305967-26306089)
chr5 (323-393)||(29832896-29832966)
chr5 (311-393)||(18652159-18652241)
chr5 (88-179)||(29538972-29539065)
chr5 (94-134)||(17864592-17864632)
[»] scaffold0006 (1 HSPs)
scaffold0006 (66-294)||(282169-282398)
[»] chr8 (4 HSPs)
chr8 (66-309)||(9233512-9233757)
chr8 (311-393)||(30830445-30830527)
chr8 (311-393)||(6285242-6285324)
chr8 (450-500)||(30830338-30830388)
[»] chr2 (2 HSPs)
chr2 (206-309)||(34025410-34025512)
chr2 (88-156)||(34025547-34025615)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 66 - 309
Target Start/End: Complemental strand, 49016365 - 49016123
Alignment:
Q  66 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 165  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  49016365 ggtggcatttagcttggacctgtgtaactattggtccataatgaaccaatatttataaccattggattatatgtatgcacaataacataatgcacctcac 49016266  T
Q  166 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 265  Q
    | ||||||||||||| ||||| |||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49016265 acgtctaattatttcatttactctttccaaaatattttcctgccttctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaacc 49016166  T
Q  266 catcgttttcgatcaatatttagaatttaataaatttaacatat 309  Q
    |||| |||||||||||||||||||||||||| ||||||||||||    
T  49016165 catcattttcgatcaatatttagaatttaat-aatttaacatat 49016123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 66 - 255
Target Start/End: Original strand, 26250498 - 26250687
Alignment:
Q  66 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 165  Q
    |||||||||| |||| ||| | || || ||||||||||||||||||||||||||||||||||| ||||| || ||||||||| || ||||||||||||||    
T  26250498 ggtggcattttgcttggacttatgcaagtattggtccataatggaccaatatttataaccattagattatatatatgcacaataatataatgcacctcac 26250597  T
Q  166 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttc 255  Q
    | ||||||||||||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  26250598 acgtctaattatttcctttactctttccaaactattttcctgctttctttttctttctgtaatttcaacattcaatcttcaattgttttc 26250687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 308 - 393
Target Start/End: Complemental strand, 39666120 - 39666035
Alignment:
Q  308 atttgctccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 393  Q
    |||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39666120 atttgctccagtacaaaattgctccagtttccagttaatgtaaccgatgtgtgacatgtggcagggtcaaatttcaacggatcaga 39666035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 43615085 - 43615167
Alignment:
Q  311 tgctccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 393  Q
    ||||||| ||||||||| |||||||| ||  |||||||||| ||||  |||||||||||||||||| |||| |||||||||||    
T  43615085 tgctccagtacaaaattactccagttcccagttaatgtaactgatgcgtgacatgtggcagggtcagattttaacggatcaga 43615167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 88 - 186
Target Start/End: Complemental strand, 35492513 - 35492413
Alignment:
Q  88 tgtaaatattggtccataatggaccaatatttataac--cattggattacatgtatgcacaagaacataatgcacctcacatgtctaattatttccttta 185  Q
    ||||| |||||||||||||| || | |||||||||    |||||||||| ||||| |||||| |||| |||  ||||||||  |||||||||||||||||    
T  35492513 tgtaagtattggtccataatagatctatatttatatagtcattggattatatgtaagcacaataacacaatatacctcacacatctaattatttccttta 35492414  T
Q  186 c 186  Q
    |    
T  35492413 c 35492413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 65 - 309
Target Start/End: Complemental strand, 42011551 - 42011308
Alignment:
Q  65 tggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctca 164  Q
    |||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||     
T  42011551 tggtggcatttagcttggacctgtataagtattggtccataatggaccaatatttataaccattggattatatgtatgcacaataacataatgcacctct 42011452  T
Q  165 catgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaac 264  Q
    || ||||||||||||| ||||| |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  42011451 cacgtctaattatttcttttactctttccaaactattttcctgccttctttttttttctgtaatttcaacattcaatcttcaattattttcaataaaaac 42011352  T
Q  265 ccatcgttttcgatcaatatttagaatttaataaatttaacatat 309  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  42011351 ccatcgttttcgatcaatatttagaatttaat-aatttaacatat 42011308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 314 - 393
Target Start/End: Original strand, 28211217 - 28211296
Alignment:
Q  314 tccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 393  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  28211217 tccattacaaaattgctccaatttcctgttaatgtaaccgatgtgtgacatgtggcagggtcaaattttaacggatcaga 28211296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 14648031 - 14648113
Alignment:
Q  311 tgctccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 393  Q
    ||||||| |||||||||||||||||| ||  |||||||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  14648031 tgctccagtacaaaattgctccagttcccagttaatgtaactgatgtgtgacatgtggcagggtcagatttcaacggatcaga 14648113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 450 - 500
Target Start/End: Original strand, 28211353 - 28211403
Alignment:
Q  450 gtgcatgtttctgctctccttcttcactcctctccgtcgtcactcctctcc 500  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  28211353 gtgcacgtttctgctctccttcttcactcctctccgtcgtcactcttctcc 28211403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 492 - 535
Target Start/End: Original strand, 28211410 - 28211453
Alignment:
Q  492 ctcctctccttcatcttcttcgttggtacgccgccgttcatctc 535  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  28211410 ctcctctccttcatcttcttcgttagtacgccgccgttcttctc 28211453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 66 - 309
Target Start/End: Original strand, 48512634 - 48512876
Alignment:
Q  66 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 165  Q
    |||| |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||    
T  48512634 ggtgacatttagcttggacctgtgtaagtattggtccataatggaccaatatttataaccattgaattatatgtatgcacaataacataatgcacctcac 48512733  T
Q  166 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 265  Q
    | || ||||||||| |||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48512734 aagtttaattattttctttactcttttcaaactattttcctaccgtctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaacc 48512833  T
Q  266 catcgttttcgatcaatatttagaatttaataaatttaacatat 309  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  48512834 catcgttttcgatcaatatttagaatttaat-aatttaacatat 48512876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 71 - 309
Target Start/End: Original strand, 50499783 - 50500020
Alignment:
Q  71 catttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcacatgtc 170  Q
    |||||||||| ||||| ||||| ||||||||||||||  |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |||    
T  50499783 catttagcttggacctgtgtaagtattggtccataataaaccaatatttataaccattgaattatatgtatgcacaataacataatgcacctcacacgtc 50499882  T
Q  171 taattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcg 270  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||    
T  50499883 taattattttctttactcttttcaaactattttcctgccttctttttctttctgtaatttcaacattcaatcttcaattgtttttaataaaaatccatcg 50499982  T
Q  271 ttttcgatcaatatttagaatttaataaatttaacatat 309  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  50499983 ttttcgatcaatatttagaatttaat-aatttaacatat 50500020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 66 - 309
Target Start/End: Complemental strand, 52489511 - 52489269
Alignment:
Q  66 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 165  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||  |||||||| |||| ||||||| |||||||||||||||||    
T  52489511 ggtggcatttagcttggacctgtgtaagtattggtccataatggatcaatatttataactgttggattatatgtgtgcacaataacataatgcacctcac 52489412  T
Q  166 atgtctaattatttcctttacccttttcaaactattttcctgccttct-ttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaac 264  Q
    | ||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||||    
T  52489411 acgtctaattatttcctttactcttttcaaactattttcctgccttcttttttatttctgtaatttcaacactcaatcttcaattgttttcaataaaaac 52489312  T
Q  265 ccatcgttttcgatcaatatttagaatttaataaatttaacatat 309  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||    
T  52489311 ccatcgttttcgatcaatatttagaa-ttaat-aatttaacatat 52489269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 65 - 298
Target Start/End: Complemental strand, 31417434 - 31417204
Alignment:
Q  65 tggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctca 164  Q
    |||||||||||||||| ||  | ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  31417434 tggtggcatttagcttggatatgtgtaagtattggtctataatggaccaatatttataaccattggattatatgtatgcacaataacataatgcacctca 31417335  T
Q  165 catgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaac 264  Q
     | |||||| |||||||||||| |||| ||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31417334 tacgtctaactatttcctttactctttccaaactattttcctgc---ctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaac 31417238  T
Q  265 ccatcgttttcgatcaatatttagaatttaataa 298  Q
    | ||  ||||||||||||||||||||||||||||    
T  31417237 ctataattttcgatcaatatttagaatttaataa 31417204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 66 - 309
Target Start/End: Original strand, 29819423 - 29819670
Alignment:
Q  66 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 165  Q
    ||||||||||||||| ||||| |||||  |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  29819423 ggtggcatttagcttggacctgtgtaagcattggtccataatgaaccaatatttataaccattggattatatgtatgcacaataacataatgcacctcac 29819522  T
Q  166 atgtctaattatttcctttacccttttcaaactattttcctgcc-----ttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataa 260  Q
    | ||||||||||||||||||   |||  ||||||||||||| ||     || ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  29819523 acgtctaattatttcctttattttttctaaactattttcctacctttttttttttttttttttgtaatttcaacattcaatcttcaattgttttcaataa 29819622  T
Q  261 aaacccatcgttttcgatcaatatttagaatttaataaatttaacatat 309  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  29819623 aaactcatcgttttcgatcaatatttagaatttaat-aatttaacatat 29819670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 66 - 309
Target Start/End: Complemental strand, 48474351 - 48474109
Alignment:
Q  66 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 165  Q
    ||||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||||||||| |||| || ||| ||||| |||||||||||||||||    
T  48474351 ggtggcatttagcttggacatgtgtaaatattggtcaataatggaccaatatttataaccattgaattatatatatacacaataacataatgcacctcac 48474252  T
Q  166 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 265  Q
    | ||||||||||||||||| | ||||||||| ||||||  | |||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||    
T  48474251 acgtctaattatttcctttgctcttttcaaattatttttttaccttctttttctttctataattccaacattcaatcttcaattgtttttaataaaaacc 48474152  T
Q  266 catcgttttcgatcaatatttagaatttaataaatttaacatat 309  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||    
T  48474151 catcattttcgatcaatatttaaaatttaat-aatttaacatat 48474109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 68 - 309
Target Start/End: Original strand, 53409088 - 53409334
Alignment:
Q  68 tggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcacat 167  Q
    ||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||     
T  53409088 tggcatttagcttggacctatgtaagtattggtctataatggaccaatatttataaccattggattatatatatgcacaataacataatgcacctcacac 53409187  T
Q  168 gtctaattatttcctttacccttttcaaactattttcctgccttctttttcttt------gtgtaatttcaacattcaatcttcaattgttttcaataaa 261  Q
    || |||||||||| ||||  ||||  ||||||||||| |||||||||||| |||       |||||||||||||||||||||||||||||||||||||||    
T  53409188 gtttaattatttcttttattctttctaaactattttcttgccttcttttttttttctctcttgtaatttcaacattcaatcttcaattgttttcaataaa 53409287  T
Q  262 aacccatcgttttcgatcaatatttagaatttaataaatttaacatat 309  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  53409288 aacccatcgttttcaatcaatatttagaatttaat-aatttaacatat 53409334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 66 - 298
Target Start/End: Original strand, 42477413 - 42477645
Alignment:
Q  66 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 165  Q
    |||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |||| ||| ||||||||    
T  42477413 ggtgtcatttagcttggacctgtgtaaatattggtccataatggaccaatatttataaccattggattatatataagcacaataacacaatacacctcac 42477512  T
Q  166 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 265  Q
    |  ||||||||||| |||||| || |  ||| || |||| |||||||| | ||||| |||||||| || |||||||||||||||||| |||||  ||||     
T  42477513 acatctaattattttctttactctctctaaaatagtttcttgccttctctctctttctgtaattttaatattcaatcttcaattgttatcaatttaaact 42477612  T
Q  266 catcgttttcgatcaatatttagaatttaataa 298  Q
    |||||||||| ||||||||||||||||||||||    
T  42477613 catcgttttcaatcaatatttagaatttaataa 42477645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 66 - 298
Target Start/End: Original strand, 37385007 - 37385234
Alignment:
Q  66 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 165  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| |||| || || ||||||  ||| |||  | |||||    
T  37385007 ggtgtcatttagcttggacctgtgtaaatattggtccataatggaccaatatttataatcattgaattatatataagcacaatgacacaatatatctcac 37385106  T
Q  166 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 265  Q
    || | |||||||||  ||||| || || ||| || |||| |||||||| | ||||| |||||||| || |||||||    | |||||||||||  ||||     
T  37385107 atatttaattattt-ttttactctctttaaaatagtttcttgccttctctctctttatgtaattttaatattcaat----atttgttttcaatttaaact 37385201  T
Q  266 catcgttttcgatcaatatttagaatttaataa 298  Q
    |||||||||| ||||||||||||||||||||||    
T  37385202 catcgttttcaatcaatatttagaatttaataa 37385234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 20718215 - 20718120
Alignment:
Q  52 aagtatatgtttgtggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaa 147  Q
    ||||||||||||   ||| |||||||| |  |||| ||||| ||||| ||||||||| ||||||||||||| ||||||||||  ||||| ||||||    
T  20718215 aagtatatgtttagagtgccatttagcctaaacctgtgtaagtattgatccataatgaaccaatatttatagccattggattgtatgtaagcacaa 20718120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 389
Target Start/End: Complemental strand, 54804415 - 54804373
Alignment:
Q  347 gtaaccgatgtatgacatgtggcagggtcaaatttcaacggat 389  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||    
T  54804415 gtaaccgatgtgtgatatgtggcagggtcagatttcaacggat 54804373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 4e-95; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 66 - 298
Target Start/End: Original strand, 3154459 - 3154691
Alignment:
Q  66 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 165  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||    
T  3154459 ggtggcatttagcttggacatttgtaagtattggtccataatggaccaatatttataaccactggattatatgtatgcacaataacataatgcacctcac 3154558  T
Q  166 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 265  Q
    | |||||||||||||||||||  ||| |||| ||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3154559 acgtctaattatttcctttactttttccaaaatatgtttctgccttctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaacc 3154658  T
Q  266 catcgttttcgatcaatatttagaatttaataa 298  Q
    |||||||||||||||||||||||||||||||||    
T  3154659 catcgttttcgatcaatatttagaatttaataa 3154691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 66 - 292
Target Start/End: Complemental strand, 6851066 - 6850840
Alignment:
Q  66 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 165  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | || ||||||| |||||||||||||||||    
T  6851066 ggtggcatttagcttggacctgtgtaagtattggtccataatggaccaatatttataaccattggattatacgtgtgcacaataacataatgcacctcac 6850967  T
Q  166 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 265  Q
    | || |||||||||||||||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||     
T  6850966 acgtttaattatttcctttactctttttaaactatttttctgccttctttttctttctgtaatttcaacattcaatcttcaattattttcaataaaaact 6850867  T
Q  266 catcgttttcgatcaatatttagaatt 292  Q
    |||||||||||||||||||||||||||    
T  6850866 catcgttttcgatcaatatttagaatt 6850840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 60 - 298
Target Start/End: Original strand, 29920348 - 29920585
Alignment:
Q  60 gtttgtggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgca 159  Q
    ||||| |||| |||||||||| || || ||||||||||||||||||||||| ||||||||||||||||| ||||| || || |||||| |||||||| ||    
T  29920348 gtttgaggtgccatttagcttggatctatgtaaatattggtccataatggatcaatatttataaccattcgattatatataagcacaataacataataca 29920447  T
Q  160 cctcacatgtctaattatttccttt-acccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaat 258  Q
    |||||||  ||||||| |||  ||| || || |  ||| || |||| |||||||| | ||||| ||||||||||| ||||||||||||||||||||||||    
T  29920448 cctcacacatctaattttttttttttactctct--aaaatagtttcttgccttctctctctttctgtaatttcaatattcaatcttcaattgttttcaat 29920545  T
Q  259 aaaaacccatcgttttcgatcaatatttagaatttaataa 298  Q
      |||| |||||||||| ||||||||||||||||||||||    
T  29920546 ttaaactcatcgttttcaatcaatatttagaatttaataa 29920585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 66 - 309
Target Start/End: Original strand, 5055097 - 5055338
Alignment:
Q  66 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 165  Q
    |||| |||||||| | ||| | ||||| | || ||||||||||||||||||||||||  |||||||||| ||||| |||||| |||| |||  ||||||     
T  5055097 ggtgtcatttagcctggacttatgtaagtgttagtccataatggaccaatatttatagtcattggattatatgtaagcacaataacacaatatacctcaa 5055196  T
Q  166 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 265  Q
    |  ||||| ||||| |||||  || |  ||| ||||| | |||||||| | ||||| |||||||||| ||||||||||||||||||||||||| |||| |    
T  5055197 acatctaaatattttctttattctctctaaa-tatttccttgccttctctctctttctgtaatttcagcattcaatcttcaattgttttcaatgaaaatc 5055295  T
Q  266 catcgttttcgatcaatatttagaatttaataaatttaacatat 309  Q
    |||||||||| ||||||||||||| |||||| ||||||||||||    
T  5055296 catcgttttcaatcaatatttagagtttaat-aatttaacatat 5055338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 8142796 - 8142878
Alignment:
Q  311 tgctccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 393  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8142796 tgctccattacaaaattgctccagtttcctgttaatgtaaccgatgtgtgacatgtggcagggtcaaatttcaacggatcaga 8142878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 450 - 500
Target Start/End: Original strand, 8142935 - 8142985
Alignment:
Q  450 gtgcatgtttctgctctccttcttcactcctctccgtcgtcactcctctcc 500  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8142935 gtgcacgtttctgctctccttcttcactcctctccgtcgtcactcctctcc 8142985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 535
Target Start/End: Original strand, 8142992 - 8143035
Alignment:
Q  492 ctcctctccttcatcttcttcgttggtacgccgccgttcatctc 535  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||    
T  8142992 ctcctctccttcatcttcttcgttagtacgtcgccgttcttctc 8143035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 29919219 - 29919269
Alignment:
Q  60 gtttgtggtggcatttagctttgacctttgtaaatattggtccataatgga 110  Q
    ||||| |||| |||||||||| || || |||||||||||||||||||||||    
T  29919219 gtttgaggtgccatttagcttggatctatgtaaatattggtccataatgga 29919269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 29920128 - 29920178
Alignment:
Q  60 gtttgtggtggcatttagctttgacctttgtaaatattggtccataatgga 110  Q
    ||||| |||| |||||||||| || || |||||||||||||||||||||||    
T  29920128 gtttgaggtgccatttagcttggatctatgtaaatattggtccataatgga 29920178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 29920238 - 29920288
Alignment:
Q  60 gtttgtggtggcatttagctttgacctttgtaaatattggtccataatgga 110  Q
    ||||| |||| |||||||||| || || |||||||||||||||||||||||    
T  29920238 gtttgaggtgccatttagcttggatctatgtaaatattggtccataatgga 29920288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 73 - 309
Target Start/End: Complemental strand, 27336353 - 27336118
Alignment:
Q  73 tttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcacatgtcta 172  Q
    |||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | ||||||||     
T  27336353 tttagcttggacctatgtaagtattggttcataatggaccaatatttataaccattggattatatgtatgcacaataacataatgcactttacatgtctg 27336254  T
Q  173 attatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcgtt 272  Q
    ||||||| |||||| ||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27336253 attattttctttactctttttaaaatatttttctgccttctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcatt 27336154  T
Q  273 ttcgatcaatatttagaatttaataaatttaacatat 309  Q
    |||||||||||||||||||||||| ||||||||||||    
T  27336153 ttcgatcaatatttagaatttaat-aatttaacatat 27336118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 73 - 309
Target Start/End: Complemental strand, 27397093 - 27396858
Alignment:
Q  73 tttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcacatgtcta 172  Q
    |||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | ||||||||     
T  27397093 tttagcttggacctatgtaagtattggttcataatggaccaatatttataaccattggattatatgtatgcacaataacataatgcactttacatgtctg 27396994  T
Q  173 attatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcgtt 272  Q
    ||||||| |||||| ||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27396993 attattttctttactctttttaaaatatttttctgccttctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcatt 27396894  T
Q  273 ttcgatcaatatttagaatttaataaatttaacatat 309  Q
    |||||||||||||||||||||||| ||||||||||||    
T  27396893 ttcgatcaatatttagaatttaat-aatttaacatat 27396858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 82 - 309
Target Start/End: Original strand, 32771246 - 32771471
Alignment:
Q  82 gacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcacatgtctaattatttcc 181  Q
    ||||| ||||| ||||||||||||||||||||||||||||||  ||| ||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  32771246 gacctgtgtaagtattggtccataatggaccaatatttataat-attagattatatgtatgcacaataacataatgcacatcacacgtttaattatttcc 32771344  T
Q  182 tttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcgttttcgatcaa 281  Q
    ||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32771345 tttactctttccaaactattttcctgccttctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcgttttcgatcaa 32771444  T
Q  282 tatttagaatttaataaatttaacatat 309  Q
    ||||||||||||||| ||||||||||||    
T  32771445 tatttagaatttaat-aatttaacatat 32771471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 26305967 - 26306089
Alignment:
Q  64 gtggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctc 163  Q
    |||||| |||||||| | ||| | ||||| ||||||||||||||||| |||||||||||  |||||||||| ||||| |||||| |||| |||  |||||    
T  26305967 gtggtgccatttagcctggacttgtgtaagtattggtccataatggatcaatatttatagtcattggattatatgtaagcacaataacacaatatacctc 26306066  T
Q  164 acatgtctaattatttcctttac 186  Q
    |||  ||||||||||| ||||||    
T  26306067 acacatctaattattttctttac 26306089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 29832896 - 29832966
Alignment:
Q  323 aaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 393  Q
    |||||||||||||||||| |||||||||| ||||| |||||||||||||||| | ||||||||||||||||    
T  29832896 aaattgctccagtttcctgttaatgtaactgatgtgtgacatgtggcagggtgagatttcaacggatcaga 29832966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 393
Target Start/End: Complemental strand, 18652241 - 18652159
Alignment:
Q  311 tgctccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 393  Q
    ||||||| |||||||||||||||||| |   |||||||||| ||||  |||||||||||||||||||||||||||| ||||||    
T  18652241 tgctccagtacaaaattgctccagttcctagttaatgtaactgatgcgtgacatgtggcagggtcaaatttcaacgaatcaga 18652159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 179
Target Start/End: Complemental strand, 29539065 - 29538972
Alignment:
Q  88 tgtaaatattggtccataatggaccaata--tttataaccattggattacatgtatgcacaagaacataatgcacctcacatgtctaattattt 179  Q
    ||||| |||||||||||||||||||||||  |||||| ||||||||||| ||| | |||||| |||| ||| |||||||||  |||||||||||    
T  29539065 tgtaagtattggtccataatggaccaatatttttatagccattggattatatgcaagcacaataacacaatacacctcacacatctaattattt 29538972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 17864592 - 17864632
Alignment:
Q  94 tattggtccataatggaccaatatttataaccattggatta 134  Q
    ||||||||||||||||| ||| ||||||| |||||||||||    
T  17864592 tattggtccataatggatcaaaatttatagccattggatta 17864632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 150; Significance: 5e-79; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 66 - 294
Target Start/End: Original strand, 282169 - 282398
Alignment:
Q  66 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 165  Q
    ||||||||||||||| ||||| ||||| ||||||| |||||| |||||||||||||||||||| ||||| |||||||||||| || ||||||||||||||    
T  282169 ggtggcatttagcttggacctgtgtaagtattggttcataatagaccaatatttataaccattagattatatgtatgcacaataatataatgcacctcac 282268  T
Q  166 atgtctaatt-atttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaac 264  Q
    | |||||||| ||||| ||||| |||| |||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  282269 acgtctaatttatttcttttactctttccaaaatatttttctgtcttctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaac 282368  T
Q  265 ccatcgttttcgatcaatatttagaattta 294  Q
     |||||||||||||||||||||||||||||    
T  282369 tcatcgttttcgatcaatatttagaattta 282398  T

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Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 66 - 309
Target Start/End: Complemental strand, 9233757 - 9233512
Alignment:
Q  66 ggtggcatttagctttgacctttgtaaatattggtccataatg-----gaccaatatttataaccattggattacatgtatgcacaagaacataatgcac 160  Q
    ||||||||||||||| ||| | ||||| ||||||||||||||      |||||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  9233757 ggtggcatttagcttggacttgtgtaagtattggtccataatataatcgaccaatatttataaccattggattatatgtgtgcacaataacataatgcac 9233658  T
Q  161 ctcacatgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataa 260  Q
    |||||| ||||||||||||||||||| ||||  |||||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  9233657 ctcacacgtctaattatttcctttactctttcaaaactatttttctgtcttctttttctttctgtaatttcaacattcaatattcaattg-tttcaataa 9233559  T
Q  261 aaacccatcgttttcgatcaatatttagaatttaataaatttaacatat 309  Q
    |||| ||||||||||||||||||||||||| ||||| ||||||||||||    
T  9233558 aaactcatcgttttcgatcaatatttagaa-ttaat-aatttaacatat 9233512  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 311 - 393
Target Start/End: Complemental strand, 30830527 - 30830445
Alignment:
Q  311 tgctccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 393  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30830527 tgctccattacaaaattgctccagtttcctattaatgtaaccgatgtgtgacatgtggcagggtcaaatttcaacggatcaga 30830445  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 6285242 - 6285324
Alignment:
Q  311 tgctccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 393  Q
    ||||||| |||||||||||||||||| ||  |||||||||| ||||  |||||||||||||||||| ||||||||||||||||    
T  6285242 tgctccagtacaaaattgctccagttcccagttaatgtaactgatgcgtgacatgtggcagggtcagatttcaacggatcaga 6285324  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 450 - 500
Target Start/End: Complemental strand, 30830388 - 30830338
Alignment:
Q  450 gtgcatgtttctgctctccttcttcactcctctccgtcgtcactcctctcc 500  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30830388 gtgcacgtttctgctctccttcttcactcctctccgtcgtcactcctctcc 30830338  T

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Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 34025512 - 34025410
Alignment:
Q  206 tgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcgttttcgatcaatatttagaatttaataaatttaac 305  Q
    |||||||||| ||||| |||||||||| |||||||| |||||||||||| ||| |||| |||| |||||| ||||||||||||| |||||| ||||||||    
T  34025512 tgccttctttctctttctgtaatttcagcattcaattttcaattgtttttaatgaaaatccattgttttcaatcaatatttagagtttaat-aatttaac 34025414  T
Q  306 atat 309  Q
    ||||    
T  34025413 atat 34025410  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 34025615 - 34025547
Alignment:
Q  88 tgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataat 156  Q
    ||||| ||||||||||||||||| |||||||||||  |||||||||| || || |||||| |||| |||    
T  34025615 tgtaagtattggtccataatggatcaatatttatagtcattggattatatctaagcacaataacacaat 34025547  T

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