View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_low_6 (Length: 530)
Name: NF2220_low_6
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Original strand, 10251227 - 10251715
Alignment:
| Q |
18 |
aaacatgctatttacattctaacattgtagctttttaccaactaactattggatgatttgggataatattttactagtttccactcattgagttcctctt |
117 |
Q |
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| T |
10251227 |
aaacatgctatttacattctaacattgtagctttttaccaacta----ttggatgatttgagataatattttactagtttctactcattgagctcctctt |
10251322 |
T |
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| Q |
118 |
taggcatgatttcgaataacatgtagtccacaatatcacacattcacgcagatacacattataagtgattggattgagattggattgtataagttttaat |
217 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||| |
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| T |
10251323 |
taggcatgatttcgaa--------agtctacaatatcacacattcacgcagataaacattataagtgattggactg-----------tataagttttaat |
10251403 |
T |
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| Q |
218 |
ataaattttgatctatgaaacaaaaacacttctcatattaggtgtgttccgatgtcgaacatgtgttagtgtcaatgcccgaatttggaaactaaaattc |
317 |
Q |
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||||||||| |||||||||||||||||| |||| |||||| | ||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
10251404 |
ataaattttaatctatgaaacaaaaacatttcttatattaagcgtgttccaatgtcaaacatgtgtcagtgtcaatgtccgaatttggaaactaaaattc |
10251503 |
T |
|
| Q |
318 |
caaacctgaaatgtaaacgttctaatcttgatctaaccaacaaccaaagatattaatgcaatcatccgaattcctcttaggttatatatgccaactagtc |
417 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10251504 |
caaacctgatatctaaacgttctaatcttgatctaaccaacaaccgaagatattaatgaaatcatccgaattcctcttaggttatatatgccaactagtc |
10251603 |
T |
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| Q |
418 |
gatg------tgtttctaatattctggcaggttgatttggttagcaacataggtttggttggtcatgtttcgtttggcgatgttctattgcctctaattt |
511 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10251604 |
gatgctcccatgtttctaatattctggcaggttgatttggttagcaacataggtttggttggtcatgtttcgtttggcgatgttctattgcctctaattt |
10251703 |
T |
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