View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_low_7 (Length: 529)
Name: NF2220_low_7
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 54472621 - 54472088
Alignment:
| Q |
1 |
gatttgaacaaattagatcctttatgaccagggattgataaattcaaagataacnnnnnnnnnn-atatctaacggtttctacatttgcaacaccatatt |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| |
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| T |
54472621 |
gatttgaacaaattagatcctttatgaccagggattgataaattcaaagataacattttttttttatatcttacagtttctacatttgcaacaccatatt |
54472522 |
T |
|
| Q |
100 |
gtagctacataagattcaaatttggatcctctaccgcgtcgactatggcaccatgcaaaagctttagaggatccatttctgatcnnnnnnntaagaatag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54472521 |
gtagctacataagattcaaatttggatcctctaccgcgtcgactatggcaccatgcaaaagctttagaggatccatttctgatcaaaaaaataagaatag |
54472422 |
T |
|
| Q |
200 |
gctatgaatcattaattaattaa------------cttcctccattaactattctaaacttcataacatgcttatttgcaaattcctattnnnnnnngaa |
287 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54472421 |
gctatgaatcattaattaattaattaattaattagcttcccccattaactattctaaacttcataacatgcttatttgcaaattcctattaaaaaaagaa |
54472322 |
T |
|
| Q |
288 |
ataggagatatataaaaatatataccgtgtgctggagtagggtagtaatgaatgtgatgaggttgtgatctcttcttccttcttgtacatataacgcaga |
387 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472321 |
ataggagatatataaaaatatataccgtgtgctggagtagggtagtaatgaatgtgatgaggttgtgatctcttcttccttcttgtacatataacgcaga |
54472222 |
T |
|
| Q |
388 |
gtaggataatgacaaggaggattatacaagctgcacctgcaactgctattataccacccacgctcaattgattcccattgttatcatttgtattgttgcc |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472221 |
gtaggataatgacaaggaggattatacaagctgcacctgcaactgctattataccacccacgctcaattgattcccattgttatcatttgtattgttgcc |
54472122 |
T |
|
| Q |
488 |
gttgttcgagggtgatgatttatgatgatgatgt |
521 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
54472121 |
gttgttcgagggtgatgatttatgatgatgatgt |
54472088 |
T |
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