View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_low_9 (Length: 504)
Name: NF2220_low_9
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 50921984 - 50922432
Alignment:
| Q |
18 |
agtcctacactcaaacccaatcttaaaaccaaaaatcacattaatactacattacaggacatgtaacatcagaaaatgtaaactcgataagaaaaataac |
117 |
Q |
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| T |
50921984 |
agtcctacactcaaacccaatcttaaaaccaaaaatcacattaatactacattacaggacatgtaacatcagaaaatataaactcgataagaaaaataac |
50922083 |
T |
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| Q |
118 |
acaaaaatatgttattccagatgcaggtaagtgttcgaaaataccgacttcatggacacaaagatgcaacaactttcaccgccaaaatcaattgtttgaa |
217 |
Q |
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| T |
50922084 |
acaaaaatatgttattccagatgcaggtaagtgttcgaaaataccgacttcatggacacaaagatgcaacaactttcaccgccaaaatcaattgtttgaa |
50922183 |
T |
|
| Q |
218 |
aagcaatattaaagtacagaaccagcaatacaggtcatgcaaatttggccaccaaagacttctgtatcttcgttaacaattataaagaacttccttaact |
317 |
Q |
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| T |
50922184 |
aagcaatattaaagtacagaaccagcaatacaggtcatgcaaatttggccaccaaagacttctgtatcttcgttaacaattataaagaacttccttaact |
50922283 |
T |
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| Q |
318 |
gaaata-cagtataccttctctccaacaacaagttcagcttgtcttttctgaagttcttctcgctgttctgtaaaatttatgtactgatcgagtgctttc |
416 |
Q |
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| T |
50922284 |
gaaatagcagtataccttctctccaacaacaagttcagcttgtcttttctgaagttcttctcgctgttctgtaaaatttatgtactgatcgagtgctttc |
50922383 |
T |
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| Q |
417 |
ttgttgacatgactaaactgttgcaagttatccttgcacttgtgtagcc |
465 |
Q |
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| T |
50922384 |
ttgttgacatgactaaactgttgcaagttatccttgcacttgtgtagcc |
50922432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 20743024 - 20742571
Alignment:
| Q |
18 |
agtcctacactcaaacccaatcttaaaaccaaaaatcacattaatactacattacaggacatgtaacatcagaaaatgtaaactcgataagaaaaataac |
117 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||| |||||| || | || |||| | |
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| T |
20743024 |
agtcctacactcaaacccaaacttaaaaccaaaaatcacattaaaactacattacagggcatgatacatcaaaaaatggaaactcaatcaaaagaatatc |
20742925 |
T |
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| Q |
118 |
acaaaaatatgttattccagatgcaggtaagtgttcgaaaataccgacttcatggacacaaaga-tgcaacaactttcaccgcca----aaatcaattgt |
212 |
Q |
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| T |
20742924 |
acaaatataggtcattccacatgcaggtgaatattcaacaagac-gacttcatagacacataaactgcaacagcattcacagccatgaaaaatcatttgt |
20742826 |
T |
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| Q |
213 |
ttgaaaagcaatat----taaagtacagaaccagcaatacaggtcatgcaaatttggccaccaaagacttct--gtatcttcgttaacaattataaagaa |
306 |
Q |
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| T |
20742825 |
tcgaaaacctttagatgataaagtgcagaaccagcaatacttgtcaggcaaaattggccattgaagacttttttgtatctttggaaacaattatgaagaa |
20742726 |
T |
|
| Q |
307 |
cttccttaactgaaat-acagtataccttctctccaacaacaagttcagcttgtcttttctgaagttcttctcgctgttctgtaaaatttatgtactgat |
405 |
Q |
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|||||| |||| ||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20742725 |
cttcctatactggaatgacagtatacctcatctcctgcatcaagttcagcttgtcttttctgaagttcttctctttgttctgtaaaatttatgtactgat |
20742626 |
T |
|
| Q |
406 |
cgagtgctttcttgttgacatgactaaactgttgcaagttatccttgcacttgtg |
460 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||| |||||| |||| |
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| T |
20742625 |
cgagtgctttcttgttgacatgactaaactgttgcaattcatcattgcacctgtg |
20742571 |
T |
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