View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2221_high_10 (Length: 385)
Name: NF2221_high_10
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 377
Target Start/End: Original strand, 29847037 - 29847397
Alignment:
| Q |
17 |
ctttccttcattgctttatgtattttttagaagaaagatctaattgctttattacctccctcttttttctctctttcacatctcccaataatcaatgaca |
116 |
Q |
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| T |
29847037 |
ctttccttcattgctttatgtattttttagaagaaagatctaattgctttattacctccctcttttttctctctttcacatctcccaataatcaatgaca |
29847136 |
T |
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| Q |
117 |
caataattatcctaatttctccaaaaacgaatctcatttgtccctaaaccttaacaaccaaaaagtttcctaatatatnnnnnnnnnnnnnnnnnnnnnt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29847137 |
caataattatcctaatttctccaaaaacgaatctcatttgtccctaaaccttaacaaccaaaaagtttcctaatatatcacaacacaacacaacacaact |
29847236 |
T |
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| Q |
217 |
catcacactcactccaaagcacttgcttccatttccacacatttcaatggccatcaaagacaaagagaagaagctctttctttggtcatcaagaaactat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29847237 |
catcacactcactccaaagcacttgcttccatttccacacatttcaatggccatcaaagacaaagagaagaagctctttctttggtcatcaagaaactat |
29847336 |
T |
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| Q |
317 |
gctgcagaacacaaacttttcctcacaactcttctacttctctgcaccattgccactctct |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29847337 |
gctgcagaacacaaacttttcctcacaactcttctacttctctgcaccattgccactctct |
29847397 |
T |
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