View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2221_high_12 (Length: 360)

Name: NF2221_high_12
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2221_high_12
NF2221_high_12
[»] chr8 (18 HSPs)
chr8 (310-344)||(44012283-44012317)
chr8 (312-344)||(35455479-35455511)
chr8 (314-344)||(4135764-4135794)
chr8 (310-344)||(34865697-34865731)
chr8 (310-344)||(42159184-42159218)
chr8 (311-344)||(8378263-8378296)
chr8 (311-344)||(17911031-17911064)
chr8 (311-344)||(18673442-18673475)
chr8 (311-344)||(20091150-20091183)
chr8 (311-344)||(26746902-26746935)
chr8 (311-344)||(27667542-27667575)
chr8 (311-344)||(30852048-30852081)
chr8 (311-344)||(32629768-32629801)
chr8 (311-348)||(37390913-37390950)
chr8 (311-344)||(38896633-38896666)
chr8 (311-344)||(42927189-42927222)
chr8 (311-343)||(25838648-25838680)
chr8 (312-344)||(37965011-37965043)
[»] chr4 (20 HSPs)
chr4 (310-344)||(51817118-51817152)
chr4 (311-344)||(17609152-17609185)
chr4 (312-344)||(35877017-35877049)
chr4 (312-344)||(37390570-37390602)
chr4 (311-342)||(3761812-3761843)
chr4 (312-347)||(23949708-23949743)
chr4 (312-343)||(41855063-41855094)
chr4 (310-344)||(37669989-37670023)
chr4 (311-344)||(4294103-4294136)
chr4 (311-344)||(7258083-7258116)
chr4 (311-344)||(22128794-22128827)
chr4 (310-343)||(33501394-33501427)
chr4 (311-344)||(34246829-34246862)
chr4 (311-344)||(39915844-39915877)
chr4 (311-344)||(42507710-42507743)
chr4 (311-344)||(48380647-48380680)
chr4 (311-344)||(50690592-50690625)
chr4 (311-344)||(51779607-51779640)
chr4 (311-344)||(54270843-54270876)
chr4 (312-344)||(43587740-43587772)
[»] chr3 (19 HSPs)
chr3 (310-344)||(38999517-38999551)
chr3 (311-344)||(48910514-48910547)
chr3 (310-344)||(8176430-8176464)
chr3 (310-344)||(47241235-47241269)
chr3 (310-340)||(50106232-50106262)
chr3 (311-344)||(2929864-2929897)
chr3 (311-344)||(5137646-5137679)
chr3 (311-344)||(8104304-8104337)
chr3 (311-344)||(9794546-9794579)
chr3 (311-344)||(24978903-24978936)
chr3 (311-344)||(28227045-28227078)
chr3 (311-344)||(28686337-28686370)
chr3 (311-344)||(32078093-32078126)
chr3 (311-344)||(32100256-32100289)
chr3 (311-344)||(39144581-39144614)
chr3 (311-344)||(47915996-47916029)
chr3 (311-344)||(51166457-51166490)
chr3 (311-344)||(54747882-54747915)
chr3 (311-343)||(52262298-52262330)
[»] chr1 (20 HSPs)
chr1 (310-344)||(50942694-50942728)
chr1 (311-344)||(8462455-8462488)
chr1 (311-344)||(41529183-41529216)
chr1 (311-344)||(42334432-42334465)
chr1 (310-344)||(11353633-11353667)
chr1 (310-344)||(14203005-14203039)
chr1 (310-344)||(25792229-25792263)
chr1 (310-344)||(40132300-40132334)
chr1 (311-344)||(8712052-8712085)
chr1 (311-344)||(8768623-8768656)
chr1 (311-344)||(13985444-13985477)
chr1 (311-344)||(25984449-25984482)
chr1 (311-344)||(34967505-34967538)
chr1 (310-343)||(35150190-35150223)
chr1 (311-344)||(39501757-39501790)
chr1 (311-344)||(39640342-39640375)
chr1 (311-344)||(41457878-41457911)
chr1 (311-344)||(47038486-47038519)
chr1 (311-344)||(47393556-47393589)
chr1 (312-344)||(26333458-26333490)
[»] chr7 (12 HSPs)
chr7 (311-344)||(3264418-3264451)
chr7 (310-344)||(10200482-10200516)
chr7 (310-344)||(22624387-22624421)
chr7 (311-344)||(1643680-1643713)
chr7 (311-344)||(6696795-6696828)
chr7 (310-343)||(14314641-14314674)
chr7 (311-344)||(24685602-24685635)
chr7 (311-344)||(24924346-24924379)
chr7 (311-344)||(28234315-28234348)
chr7 (311-343)||(3945205-3945237)
chr7 (311-343)||(5680377-5680409)
chr7 (311-343)||(5705429-5705461)
[»] chr6 (8 HSPs)
chr6 (311-344)||(3787166-3787199)
chr6 (310-344)||(8493572-8493606)
chr6 (310-344)||(14310941-14310975)
chr6 (311-344)||(1114488-1114521)
chr6 (311-344)||(2010243-2010276)
chr6 (311-344)||(10364644-10364677)
chr6 (311-344)||(27080508-27080541)
chr6 (312-348)||(19418784-19418820)
[»] chr2 (18 HSPs)
chr2 (311-344)||(36443587-36443620)
chr2 (311-344)||(39293420-39293453)
chr2 (310-344)||(12123043-12123077)
chr2 (310-344)||(36068177-36068211)
chr2 (311-344)||(1684311-1684344)
chr2 (311-344)||(5669181-5669214)
chr2 (311-344)||(8341655-8341688)
chr2 (311-344)||(12467703-12467736)
chr2 (311-344)||(13196436-13196469)
chr2 (311-344)||(14943438-14943471)
chr2 (311-344)||(16062602-16062635)
chr2 (311-344)||(22050642-22050675)
chr2 (311-344)||(25899074-25899107)
chr2 (311-344)||(27244960-27244993)
chr2 (311-344)||(40833542-40833575)
chr2 (311-344)||(44710008-44710041)
chr2 (311-343)||(3628561-3628593)
chr2 (311-343)||(34213201-34213233)
[»] scaffold0154 (1 HSPs)
scaffold0154 (310-344)||(4154-4188)
[»] chr5 (13 HSPs)
chr5 (310-344)||(39895974-39896008)
chr5 (310-344)||(39990375-39990409)
chr5 (311-344)||(12503919-12503952)
chr5 (311-344)||(15268448-15268481)
chr5 (311-344)||(21582692-21582725)
chr5 (311-344)||(21772822-21772855)
chr5 (311-344)||(25784705-25784738)
chr5 (311-344)||(29816278-29816311)
chr5 (311-344)||(36487357-36487390)
chr5 (311-344)||(40555143-40555176)
chr5 (311-343)||(5288920-5288952)
chr5 (312-344)||(6923088-6923120)
chr5 (312-344)||(40915588-40915620)
[»] scaffold0160 (1 HSPs)
scaffold0160 (311-344)||(25935-25968)
[»] scaffold0057 (1 HSPs)
scaffold0057 (310-343)||(39837-39870)


Alignment Details
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 44012283 - 44012317
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||||||||||||||    
T  44012283 tcaatgaaacattaatgttattttttctattatat 44012317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 35455479 - 35455511
Alignment:
Q  312 aatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||||||||||||    
T  35455479 aatgaaacattaatgttattttttctattatat 35455511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 344
Target Start/End: Original strand, 4135764 - 4135794
Alignment:
Q  314 tgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||||||||||    
T  4135764 tgaaacattaatgttattttttctattatat 4135794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 34865697 - 34865731
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    |||||||| ||||||||||||||||||||||||||    
T  34865697 tcaatgaatcattaatgttattttttctattatat 34865731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 42159218 - 42159184
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    ||||| |||||||||||||||||||||||||||||    
T  42159218 tcaataaaacattaatgttattttttctattatat 42159184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 8378296 - 8378263
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  8378296 caatgaaacattaatgttatttttcctattatat 8378263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 17911031 - 17911064
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||| ||||||||||||||    
T  17911031 caatgaaacattaatgttaatttttctattatat 17911064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 18673442 - 18673475
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||| ||||||||||||||    
T  18673442 caatgaaacattaatgttactttttctattatat 18673475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 20091183 - 20091150
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  20091183 caatgaaacattaatgttatttttcctattatat 20091150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 26746902 - 26746935
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||| ||||||||||||||||||    
T  26746902 caatgaaacattaatattattttttctattatat 26746935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 27667542 - 27667575
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  27667542 caatgaaacattaatgttatttttcctattatat 27667575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 30852048 - 30852081
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  30852048 caatgaaacattaatgttatttttcctattatat 30852081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 32629801 - 32629768
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||| |||||||||||||||||||||||||||||    
T  32629801 caataaaacattaatgttattttttctattatat 32629768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 37390950 - 37390913
Alignment:
Q  311 caatgaaacattaatgttattttttctattatatatat 348  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  37390950 caatgaaacattaacgttactttttctattatatatat 37390913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 38896666 - 38896633
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  38896666 caatgaaacattaatgttatttttcctattatat 38896633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 42927189 - 42927222
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  42927189 caatgaaacattaatgttatttttcctattatat 42927222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 25838680 - 25838648
Alignment:
Q  311 caatgaaacattaatgttattttttctattata 343  Q
    |||||||||||||||||||||||| ||||||||    
T  25838680 caatgaaacattaatgttatttttcctattata 25838648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 37965043 - 37965011
Alignment:
Q  312 aatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||| ||||||||||||||    
T  37965043 aatgaaacattaatgttactttttctattatat 37965011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 51817152 - 51817118
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||||||||||||||    
T  51817152 tcaatgaaacattaatgttattttttctattatat 51817118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 17609185 - 17609152
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||||||||||||    
T  17609185 caatgaaacattaatgttattttttctattatat 17609152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 35877049 - 35877017
Alignment:
Q  312 aatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||||||||||||    
T  35877049 aatgaaacattaatgttattttttctattatat 35877017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 37390570 - 37390602
Alignment:
Q  312 aatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||||||||||||    
T  37390570 aatgaaacattaatgttattttttctattatat 37390602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 342
Target Start/End: Original strand, 3761812 - 3761843
Alignment:
Q  311 caatgaaacattaatgttattttttctattat 342  Q
    ||||||||||||||||||||||||||||||||    
T  3761812 caatgaaacattaatgttattttttctattat 3761843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 23949743 - 23949708
Alignment:
Q  312 aatgaaacattaatgttattttttctattatatata 347  Q
    |||| |||||||||||||||||||||||||||||||    
T  23949743 aatgcaacattaatgttattttttctattatatata 23949708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 343
Target Start/End: Original strand, 41855063 - 41855094
Alignment:
Q  312 aatgaaacattaatgttattttttctattata 343  Q
    ||||||||||||||||||||||||||||||||    
T  41855063 aatgaaacattaatgttattttttctattata 41855094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 37669989 - 37670023
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||| |||||||||    
T  37669989 tcaatgaaacattaatgttatttttcctattatat 37670023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 4294136 - 4294103
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  4294136 caatgaaacattaatgttatttttcctattatat 4294103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 7258116 - 7258083
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||| ||||||||||||||    
T  7258116 caatgaaacattaatgttactttttctattatat 7258083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 22128794 - 22128827
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||| |||||||||||||    
T  22128794 caatgaaacattaatgttatcttttctattatat 22128827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 33501394 - 33501427
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattata 343  Q
    |||||||||||||||||||| |||||||||||||    
T  33501394 tcaatgaaacattaatgttactttttctattata 33501427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 34246829 - 34246862
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||||||| ||||    
T  34246829 caatgaaacattaatgttattttttctataatat 34246862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 39915844 - 39915877
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  39915844 caatgaaacattaatgttatttttcctattatat 39915877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 42507743 - 42507710
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||| ||||||||||||||    
T  42507743 caatgaaacattaatgttactttttctattatat 42507710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 48380647 - 48380680
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  48380647 caatgaaacattaatgttatttttcctattatat 48380680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 50690625 - 50690592
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  50690625 caatgaaacattaatgttatttttcctattatat 50690592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 51779607 - 51779640
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||| ||||||||||||||    
T  51779607 caatgaaacattaatgttactttttctattatat 51779640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 54270843 - 54270876
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||| |||||||||||||||||||||||||    
T  54270843 caatgaaatattaatgttattttttctattatat 54270876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 43587740 - 43587772
Alignment:
Q  312 aatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||| |||||||||    
T  43587740 aatgaaacattaatgttatttttcctattatat 43587772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 38999517 - 38999551
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||||||||||||||    
T  38999517 tcaatgaaacattaatgttattttttctattatat 38999551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 48910547 - 48910514
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||||||||||||    
T  48910547 caatgaaacattaatgttattttttctattatat 48910514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 8176430 - 8176464
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||| ||||||||||||||||||    
T  8176430 tcaatgaaacattaattttattttttctattatat 8176464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 47241235 - 47241269
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||| |||||||||    
T  47241235 tcaatgaaacattaatgttatttttcctattatat 47241269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 340
Target Start/End: Complemental strand, 50106262 - 50106232
Alignment:
Q  310 tcaatgaaacattaatgttattttttctatt 340  Q
    |||||||||||||||||||||||||||||||    
T  50106262 tcaatgaaacattaatgttattttttctatt 50106232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 2929897 - 2929864
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  2929897 caatgaaacattaatgttatttttcctattatat 2929864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 5137679 - 5137646
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  5137679 caatgaaacattaatgttatttttcctattatat 5137646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 8104304 - 8104337
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  8104304 caatgaaacattaatgttatttttcctattatat 8104337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 9794546 - 9794579
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||| |||||||||||||||||||||||||    
T  9794546 caatgaaatattaatgttattttttctattatat 9794579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 24978903 - 24978936
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  24978903 caatgaaacattaatgttatttttcctattatat 24978936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 28227045 - 28227078
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  28227045 caatgaaacattaatgttatttttcctattatat 28227078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 28686370 - 28686337
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||| ||||||||||||||    
T  28686370 caatgaaacattaatgttactttttctattatat 28686337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 32078093 - 32078126
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  32078093 caatgaaacattaatgttatttttcctattatat 32078126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 32100289 - 32100256
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  32100289 caatgaaacattaatgttatttttcctattatat 32100256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 39144614 - 39144581
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  39144614 caatgaaacattaatgttatttttcctattatat 39144581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 47916029 - 47915996
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||| |||||||||||||||||||||||||    
T  47916029 caatgaaatattaatgttattttttctattatat 47915996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 51166490 - 51166457
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  51166490 caatgaaacattaatgttatttttcctattatat 51166457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 54747915 - 54747882
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||| |||||||||||||||||||||||||    
T  54747915 caatgaaaaattaatgttattttttctattatat 54747882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 52262298 - 52262330
Alignment:
Q  311 caatgaaacattaatgttattttttctattata 343  Q
    ||||||||||||||||||| |||||||||||||    
T  52262298 caatgaaacattaatgttactttttctattata 52262330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 50942694 - 50942728
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||||||||||||||    
T  50942694 tcaatgaaacattaatgttattttttctattatat 50942728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 8462488 - 8462455
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||||||||||||    
T  8462488 caatgaaacattaatgttattttttctattatat 8462455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 41529183 - 41529216
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||||||||||||    
T  41529183 caatgaaacattaatgttattttttctattatat 41529216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 42334465 - 42334432
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||||||||||||    
T  42334465 caatgaaacattaatgttattttttctattatat 42334432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 11353633 - 11353667
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||| ||||||||||||||    
T  11353633 tcaatgaaacattaatgttactttttctattatat 11353667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 14203005 - 14203039
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||| |||||||||    
T  14203005 tcaatgaaacattaatgttatttttcctattatat 14203039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 25792229 - 25792263
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||| |||||||||    
T  25792229 tcaatgaaacattaatgttatttttcctattatat 25792263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 40132300 - 40132334
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||| |||||||||    
T  40132300 tcaatgaaacattaatgttatttttcctattatat 40132334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 8712085 - 8712052
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||| ||||||||||||||    
T  8712085 caatgaaacattaatgttactttttctattatat 8712052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 8768656 - 8768623
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||| |||||||||||||||||||||||||    
T  8768656 caatgaaatattaatgttattttttctattatat 8768623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 13985477 - 13985444
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  13985477 caatgaaacattaatgttatttttcctattatat 13985444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 25984449 - 25984482
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  25984449 caatgaaacattaatgttatttttcctattatat 25984482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 34967538 - 34967505
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||| |||||||||||||||||||||||||    
T  34967538 caatgaaaaattaatgttattttttctattatat 34967505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 35150223 - 35150190
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattata 343  Q
    |||||||||| |||||||||||||||||||||||    
T  35150223 tcaatgaaactttaatgttattttttctattata 35150190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 39501757 - 39501790
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||| |||||||||||||||||||||||||    
T  39501757 caatgaaatattaatgttattttttctattatat 39501790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 39640342 - 39640375
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||| |||||||||||||||||||||||||    
T  39640342 caatgaaatattaatgttattttttctattatat 39640375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 41457911 - 41457878
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||| |||||||||||||||||||||||||    
T  41457911 caatgaaatattaatgttattttttctattatat 41457878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 47038519 - 47038486
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  47038519 caatgaaacattaatgttatttttcctattatat 47038486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 47393589 - 47393556
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||| ||||||||||||||    
T  47393589 caatgaaacattaatgttactttttctattatat 47393556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 26333490 - 26333458
Alignment:
Q  312 aatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||| |||||||||    
T  26333490 aatgaaacattaatgttatttttcctattatat 26333458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 3264418 - 3264451
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||||||||||||    
T  3264418 caatgaaacattaatgttattttttctattatat 3264451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 10200516 - 10200482
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||| |||||||||    
T  10200516 tcaatgaaacattaatgttatttttcctattatat 10200482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 22624387 - 22624421
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||| ||||||||||||||    
T  22624387 tcaatgaaacattaatgttactttttctattatat 22624421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 1643713 - 1643680
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  1643713 caatgaaacattaatgttatttttcctattatat 1643680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 6696828 - 6696795
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||| ||||||||    
T  6696828 caatgaaacattaatgttattttttttattatat 6696795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 14314641 - 14314674
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattata 343  Q
    ||||||||| ||||||||||||||||||||||||    
T  14314641 tcaatgaaatattaatgttattttttctattata 14314674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 24685635 - 24685602
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  24685635 caatgaaacattaatgttatttttcctattatat 24685602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 24924379 - 24924346
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||| |||||||||||||||||||||||||    
T  24924379 caatgaaaaattaatgttattttttctattatat 24924346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 28234348 - 28234315
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  28234348 caatgaaacattaatgttatttttcctattatat 28234315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 3945205 - 3945237
Alignment:
Q  311 caatgaaacattaatgttattttttctattata 343  Q
    ||||| |||||||||||||||||||||||||||    
T  3945205 caatgcaacattaatgttattttttctattata 3945237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 5680409 - 5680377
Alignment:
Q  311 caatgaaacattaatgttattttttctattata 343  Q
    |||||||||||||||||||||||| ||||||||    
T  5680409 caatgaaacattaatgttatttttcctattata 5680377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 5705461 - 5705429
Alignment:
Q  311 caatgaaacattaatgttattttttctattata 343  Q
    |||||||||||||||||||||||| ||||||||    
T  5705461 caatgaaacattaatgttatttttcctattata 5705429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 3787166 - 3787199
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||||||||||||    
T  3787166 caatgaaacattaatgttattttttctattatat 3787199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 8493606 - 8493572
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||| |||||||||    
T  8493606 tcaatgaaacattaatgttatttttcctattatat 8493572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 14310975 - 14310941
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||| |||||||||    
T  14310975 tcaatgaaacattaatgttatttttcctattatat 14310941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 1114521 - 1114488
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  1114521 caatgaaacattaatgttatttttcctattatat 1114488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 2010276 - 2010243
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  2010276 caatgaaacattaatgttatttttcctattatat 2010243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 10364677 - 10364644
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||| ||||||||||||||    
T  10364677 caatgaaacattaatgttactttttctattatat 10364644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 27080541 - 27080508
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  27080541 caatgaaacattaatgttatttttcctattatat 27080508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 19418784 - 19418820
Alignment:
Q  312 aatgaaacattaatgttattttttctattatatatat 348  Q
    |||||||||||||||||| |||||||||| |||||||    
T  19418784 aatgaaacattaatgttactttttctattttatatat 19418820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 36443587 - 36443620
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||||||||||||    
T  36443587 caatgaaacattaatgttattttttctattatat 36443620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 39293420 - 39293453
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||||||||||||    
T  39293420 caatgaaacattaatgttattttttctattatat 39293453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 12123077 - 12123043
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    ||||| |||||||||||||||||||||||||||||    
T  12123077 tcaataaaacattaatgttattttttctattatat 12123043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 36068177 - 36068211
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||| |||||||||    
T  36068177 tcaatgaaacattaatgttatttttcctattatat 36068211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 1684344 - 1684311
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||| ||||||||||||||    
T  1684344 caatgaaacattaatgttactttttctattatat 1684311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 5669214 - 5669181
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  5669214 caatgaaacattaatgttatttttcctattatat 5669181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 8341688 - 8341655
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||| ||||||||||||||    
T  8341688 caatgaaacattaatgttactttttctattatat 8341655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 12467703 - 12467736
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||| |||||||||||||||||    
T  12467703 caatgaaacattaatgctattttttctattatat 12467736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 13196436 - 13196469
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||| ||||||||||||||||||    
T  13196436 caatgaaacattaatattattttttctattatat 13196469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 14943471 - 14943438
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  14943471 caatgaaacattaatgttatttttcctattatat 14943438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 16062602 - 16062635
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  16062602 caatgaaacattaatgttatttttcctattatat 16062635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 22050675 - 22050642
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||| |||||||||||||||||||||||||    
T  22050675 caatgaaatattaatgttattttttctattatat 22050642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 25899074 - 25899107
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||| ||||||||||||||    
T  25899074 caatgaaacattaatgttactttttctattatat 25899107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 27244960 - 27244993
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  27244960 caatgaaacattaatgttatttttcctattatat 27244993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 40833542 - 40833575
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||| ||||||||||||||    
T  40833542 caatgaaacattaatgttactttttctattatat 40833575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 44710041 - 44710008
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||| |||||||||||||||||||||||||    
T  44710041 caatgaaatattaatgttattttttctattatat 44710008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 3628593 - 3628561
Alignment:
Q  311 caatgaaacattaatgttattttttctattata 343  Q
    |||||||||||||||||||||||| ||||||||    
T  3628593 caatgaaacattaatgttatttttcctattata 3628561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 34213201 - 34213233
Alignment:
Q  311 caatgaaacattaatgttattttttctattata 343  Q
    |||||||||||||||||||||||| ||||||||    
T  34213201 caatgaaacattaatgttatttttcctattata 34213233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 4188 - 4154
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||| ||||||||||||||    
T  4188 tcaatgaaacattaatgttactttttctattatat 4154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 39896008 - 39895974
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||| ||||||||||||||||||||    
T  39896008 tcaatgaaacattactgttattttttctattatat 39895974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 39990409 - 39990375
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||||| |||||||||    
T  39990409 tcaatgaaacattaatgttatttttcctattatat 39990375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 12503919 - 12503952
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  12503919 caatgaaacattaatgttatttttcctattatat 12503952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 15268481 - 15268448
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||| |||||||||||||||    
T  15268481 caatgaaacattaatgttgttttttctattatat 15268448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 21582725 - 21582692
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||| |||||||||||||||||||||||||    
T  21582725 caatgaaatattaatgttattttttctattatat 21582692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 21772855 - 21772822
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  21772855 caatgaaacattaatgttatttttcctattatat 21772822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 25784738 - 25784705
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  25784738 caatgaaacattaatgttatttttcctattatat 25784705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 29816278 - 29816311
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  29816278 caatgaaacattaatgttatttttcctattatat 29816311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 36487357 - 36487390
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    ||||||| ||||||||||||||||||||||||||    
T  36487357 caatgaagcattaatgttattttttctattatat 36487390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 40555143 - 40555176
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||| |||||||||||||||||||||||||    
T  40555143 caatgaaatattaatgttattttttctattatat 40555176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 5288920 - 5288952
Alignment:
Q  311 caatgaaacattaatgttattttttctattata 343  Q
    ||||| |||||||||||||||||||||||||||    
T  5288920 caatgcaacattaatgttattttttctattata 5288952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 6923088 - 6923120
Alignment:
Q  312 aatgaaacattaatgttattttttctattatat 344  Q
    ||||||||||||||||||||||| |||||||||    
T  6923088 aatgaaacattaatgttatttttcctattatat 6923120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 40915620 - 40915588
Alignment:
Q  312 aatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||| ||||||||||||||    
T  40915620 aatgaaacattaatgttactttttctattatat 40915588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 25968 - 25935
Alignment:
Q  311 caatgaaacattaatgttattttttctattatat 344  Q
    |||||||||||||||||||||||| |||||||||    
T  25968 caatgaaacattaatgttatttttcctattatat 25935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 39837 - 39870
Alignment:
Q  310 tcaatgaaacattaatgttattttttctattata 343  Q
    |||||||||||||||||||||||||||| |||||    
T  39837 tcaatgaaacattaatgttattttttctgttata 39870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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