View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2221_high_15 (Length: 356)
Name: NF2221_high_15
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 197
Target Start/End: Complemental strand, 37922801 - 37922609
Alignment:
| Q |
5 |
tttgaattgtatgtctaatatagttcaccattctttaatagtgattaatctttattagaaaacatgttagatatacaagtcaaaatttattcttcgaata |
104 |
Q |
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| T |
37922801 |
tttgaattgtatgtctaatatagttcaccattctttaatagtaattaatctttattagaaaacatgttagatatacaactcaaaatttattcttctaata |
37922702 |
T |
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| Q |
105 |
gaattttctccatactcaagagtcgaacatcaatcatatgacaatttgctaaagacgttaagtatcttaaaactcagtcaaactcattgttgg |
197 |
Q |
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| T |
37922701 |
gaattttctccatactcaagagtcgaacatcaatcatatgacaatttgctaaagacgttgagtatcttaaaactcagtcaaactcattgttgg |
37922609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 37922557 - 37922466
Alignment:
| Q |
249 |
gatctttcattaatcaaagagtggcaatatatcaagagctgctaa-gacatcaatacaagacgacatgagaaaactcaactaaatagaagca |
339 |
Q |
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| T |
37922557 |
gatctttcattaatcaaagagtggcaatatatcaagagctgctaatgacatcaatacaagacgacatgagaaaactcaactaaataaaagca |
37922466 |
T |
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