View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2221_high_16 (Length: 355)
Name: NF2221_high_16
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 42222247 - 42222577
Alignment:
| Q |
18 |
aaggcctccatatggagtggtatatcttgctccaactaagaagcactatgttggctttagcaatggagtacgacagctgagaaatgtgttagatgaggag |
117 |
Q |
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| T |
42222247 |
aaggcctccatatggagtggtatatcttgctccaactaagaagcactatgttggctttagcaatggagtacgacagctgagaaatgtgttagatgaggag |
42222346 |
T |
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| Q |
118 |
ggcatttttggagtgcatttggttaaggatttggctgacagagatatctggaagttgtttcacaagtgaacaggaattcaaagatcagatggactattat |
217 |
Q |
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| T |
42222347 |
ggcatttttggagtgcatttggttaaggatttggctgacagagatatctggaagttgtttcacaagtgaacaggaattcaaagatcagatggattattat |
42222446 |
T |
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| Q |
218 |
agcaaacttcagtg-gnnnnnnntctagacaacattcatactctgaatcattcttttgttttttgaattaataatttctccatttttcttatagc-ttag |
315 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42222447 |
agcaaacttcagtgaaaaaaaaatctagacaacattcatactctgaatcattcttttgttttttgaattaataatttctccatttttcttatagctttag |
42222546 |
T |
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| Q |
316 |
taaataacggaggtctgaatttgtagaatta |
346 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42222547 |
taaataacggaggtctgaatttgtagaatta |
42222577 |
T |
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