View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2221_high_17 (Length: 348)
Name: NF2221_high_17
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 285
Target Start/End: Original strand, 48320374 - 48320650
Alignment:
| Q |
9 |
ccatagtaattttcttgggatggtggggtggaaaaaagatcattaaagttactaactattccaactccacgaagattttggtggggtccattatttttat |
108 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48320374 |
ccatagtaattttcttgggatggtggactggaaaaaacatcattaaagttactaactattccaactccttgaagattttggtggggtccattatttttat |
48320473 |
T |
|
| Q |
109 |
taatggataaattgatatgctgagtttgttgggacaatgaagtgggacccacattgttgttattgttatcaatggataaatatgctagtgttgggttact |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48320474 |
taatggataaattgatatgctgagtttgttgggacaatgaagtgggacccacattgttgttattgttatcaatggataaatctgctagtgttgggttact |
48320573 |
T |
|
| Q |
209 |
catattgaagaaacttgggtcaagggaattttcgaagcagtcaaacatgagatcttcatcttcaatacttggattca |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48320574 |
catattgaagaaacttgggtcaagggaattttcgaaacagtcaaacatgagatcttcatcttccatacttggattca |
48320650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 48320679 - 48320720
Alignment:
| Q |
298 |
aatttacgttggttgaaacaaaattatgggatggtgatgatg |
339 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48320679 |
aatttacgttggttgaaacaaaattatggaatggtgatgatg |
48320720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University