View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2221_high_33 (Length: 244)
Name: NF2221_high_33
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 2809487 - 2809278
Alignment:
| Q |
23 |
aaattaatttagctctaattgaagatataattgggactagggtggaaagatgttggatcgactgacaaaagtttatggnnnnnnnnnaaggaaaaagttt |
122 |
Q |
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| T |
2809487 |
aaattaatttagctctaattgaagatataattgggactagggtggaaagatgttagatggtctgacaaaagtttatggttttttttgaaggaaaaagttt |
2809388 |
T |
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| Q |
123 |
atggttttctctacataaagtctagctcttggtccgactagtttaataaaaagactatgctcaagtctataaaaacgatatttatttatttaaatagttc |
222 |
Q |
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| T |
2809387 |
aaggttttctcta-----agtctagctcttggtccgactagtttaataaaaagactatgctcaggtttataaaaacgatatttatttatttaaatagttc |
2809293 |
T |
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| Q |
223 |
aagattaaactctct |
237 |
Q |
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| T |
2809292 |
aggattaaactctct |
2809278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 2814230 - 2814135
Alignment:
| Q |
115 |
aaaagtttatggttttctctacataaagtctagctcttggtccgactagtttaataaaaagactatgctcaagtctataaaaacgatatttattta |
210 |
Q |
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| T |
2814230 |
aaaagtctatggtctgatctacataaagtctaacttttggtccaactaatttaataaaaagactatgctcaagtctataaaaacgatatttattta |
2814135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 2809126 - 2809086
Alignment:
| Q |
197 |
acgatatttatttatttaaatagttcaagattaaactctct |
237 |
Q |
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| T |
2809126 |
acgatatttatttatttaagtagttcaggattaaactctct |
2809086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 2809222 - 2809182
Alignment:
| Q |
197 |
acgatatttatttatttaaatagttcaagattaaactctct |
237 |
Q |
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| T |
2809222 |
acgatatttatttatttaagtagttcaggattaaactctct |
2809182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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