View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2221_high_4 (Length: 510)
Name: NF2221_high_4
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 16 - 493
Target Start/End: Original strand, 33488756 - 33489230
Alignment:
| Q |
16 |
atccacacaaaccctcgattccaatacactctcgtcatctttcagagcttcctcatctttcaacgattttctctcagcagcagaagcacatgaagaagtg |
115 |
Q |
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| T |
33488756 |
atccacacaaaccctcgattccaatacactctcgtcatctttcagagcttcctcatctttcaacgattttctctcagcagcagaagcacatgaagaagtg |
33488855 |
T |
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| Q |
116 |
gaagaagagggaggatatgcagctaataaagctgtagcattccactcatggttcctaacaagttctgaaaatagaagtatcagtgaagccatattgcaat |
215 |
Q |
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| T |
33488856 |
gaagaagagggaggatatgcagctaataaagctgtagcattccactcatggttcctaacaagttctgaaaatagaagtatcagtgaagccatattgcaat |
33488955 |
T |
|
| Q |
216 |
tcaaaaatttcaagagatttgtatatagtagttgatgttaaataaaagttgatggttataaagaaagaaaatttcaaaagttatatatagagaatgaagg |
315 |
Q |
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| T |
33488956 |
tcaaaaatttcaagagatttgtatatagtagttgatgttaaataaaagttgatggtt---aagaaagaaaatttcaaaagttatatatagagaatgaagg |
33489052 |
T |
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| Q |
316 |
aatataaaagtggtcacagattgtgtgttttctgttagctgaaacagctgtttttgttttaacggtaaaacaaaatcagtggtttggtttctattgttta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33489053 |
aatataaaagtggtcacagattgtgtgttttctgttagctgaaacagcagtttttgttttaacggtataacaaaatcagtggtttggtttctattgttta |
33489152 |
T |
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| Q |
416 |
ttgtagcggcaccgctgattttttctatgcgtgttgttgccacttgtattgtctaggaatacatggaaactcaaaacc |
493 |
Q |
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| T |
33489153 |
ttgtagcggcaccgatgattttttctatgcgtgttgttgccacttgtattgtctaggaatacatggaaactcaaaacc |
33489230 |
T |
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Back To:
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 44679602 - 44679657
Alignment:
| Q |
436 |
ttttctatgcgtgttgttgccacttgtattgtctaggaatacatggaaactcaaaacc |
493 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44679602 |
ttttatatgcgtgttgttgccac--gtattgtctaggaatacatggaaactcaaaacc |
44679657 |
T |
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