View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2221_high_5 (Length: 473)

Name: NF2221_high_5
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2221_high_5
NF2221_high_5
[»] chr2 (10 HSPs)
chr2 (12-458)||(2964790-2965234)
chr2 (402-458)||(1647269-1647325)
chr2 (401-458)||(787364-787421)
chr2 (261-293)||(41702344-41702376)
chr2 (366-456)||(1742015-1742106)
chr2 (370-423)||(36409388-36409442)
chr2 (402-455)||(41817201-41817254)
chr2 (402-458)||(28677640-28677696)
chr2 (402-450)||(29316764-29316812)
chr2 (402-458)||(40158751-40158807)
[»] chr8 (7 HSPs)
chr8 (402-455)||(7646239-7646292)
chr8 (402-458)||(10383918-10383974)
chr8 (407-458)||(3254263-3254314)
chr8 (402-456)||(9835883-9835937)
chr8 (402-458)||(2458547-2458603)
chr8 (402-458)||(42215287-42215343)
chr8 (408-456)||(43368683-43368731)
[»] chr5 (8 HSPs)
chr5 (402-459)||(3977341-3977398)
chr5 (401-458)||(499712-499769)
chr5 (371-454)||(17258868-17258952)
chr5 (402-456)||(38728435-38728489)
chr5 (402-455)||(36638780-36638833)
chr5 (402-458)||(10125699-10125755)
chr5 (402-458)||(17368709-17368765)
chr5 (261-293)||(42573938-42573970)
[»] chr1 (7 HSPs)
chr1 (401-458)||(35925722-35925779)
chr1 (402-458)||(31118076-31118132)
chr1 (261-295)||(2194484-2194518)
chr1 (404-458)||(37811887-37811941)
chr1 (402-459)||(33723362-33723419)
chr1 (260-293)||(34619521-34619554)
chr1 (402-450)||(6292526-6292574)
[»] chr3 (9 HSPs)
chr3 (402-458)||(49465646-49465702)
chr3 (402-458)||(5391912-5391968)
chr3 (409-458)||(39723221-39723270)
chr3 (410-459)||(39723380-39723429)
chr3 (261-294)||(43079652-43079685)
chr3 (409-458)||(45541611-45541660)
chr3 (401-458)||(53952080-53952137)
chr3 (404-456)||(27290884-27290936)
chr3 (401-453)||(38318992-38319044)
[»] chr4 (8 HSPs)
chr4 (354-392)||(1706606-1706644)
chr4 (403-458)||(43886112-43886167)
chr4 (401-452)||(44249317-44249368)
chr4 (402-459)||(20936209-20936266)
chr4 (403-456)||(46090797-46090850)
chr4 (401-458)||(48719372-48719429)
chr4 (402-458)||(1137745-1137801)
chr4 (431-459)||(52172787-52172815)
[»] chr7 (3 HSPs)
chr7 (261-293)||(34672908-34672940)
chr7 (409-458)||(43219625-43219674)
chr7 (410-459)||(43219784-43219833)
[»] chr6 (4 HSPs)
chr6 (402-458)||(31624123-31624179)
chr6 (410-459)||(696483-696532)
chr6 (409-458)||(696642-696691)
chr6 (403-456)||(32577969-32578022)
[»] scaffold0475 (1 HSPs)
scaffold0475 (262-309)||(11685-11732)


Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 12 - 458
Target Start/End: Complemental strand, 2965234 - 2964790
Alignment:
Q  12 tatggcgagagagaaacgaaccttagattcaacttctactgatgaagatcaacctgatagaaaacgacctgctttagctaggttcannnnnnnnnnnnnn 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  2965234 tatggcgagagagaaacgaaccttagattcaacttctactgatgaagatcaacctgatagaaaacgacctgctttagctaggttcattttttcaactttt 2965135  T
Q  112 nnnn--cttcccattattcagcttttggattttattttatgctggaatctgttttgaatgaaaactgattgagaaatttattataataattaattaatgg 209  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2965134 tttcttcttcccattattcagcttttggattttattttatgctggaatctgttttgaatgaaaaatgattgagaaatttattataataattaattaatgg 2965035  T
Q  210 aagtgtaaatgaaattctagtgttattggatttgattctatagttgatattctgtttggataaacagcttaattttcagcttatgcttataagcgcttat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2965034 aagtgtaaatgaaattctagtgttattggatttgattctatagttgatattctgtttggataaacagcttaattttcagcttatgcttataagcgcttat 2964935  T
Q  310 gataagctattttcataacaaataataaatttaagttagactgtttgttttcgtagaagatataagctgttttcataaactattatgaatttttatggaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2964934 gataagctattttcataacaaataataaatttaagttagact----gttttcgtagaagatataagctgttttcataaactattatgaatttttatggaa 2964839  T
Q  410 ataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2964838 ataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 2964790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 1647269 - 1647325
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    |||||||||||||||||||| |||| |  | ||||||||||||||||||||||||||    
T  1647269 ttatggaaataagctgaaaacagcttatgagcatgtcataagctgttttcataagtt 1647325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 787364 - 787421
Alignment:
Q  401 tttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    |||||||| |||||||||||| |||| |   |||||||||||||||||||||||||||    
T  787364 tttatggagataagctgaaaacagcttatggacatgtcataagctgttttcataagtt 787421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 41702376 - 41702344
Alignment:
Q  261 ctgtttggataaacagcttaattttcagcttat 293  Q
    |||||||||||||||||||||||||||||||||    
T  41702376 ctgtttggataaacagcttaattttcagcttat 41702344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 456
Target Start/End: Complemental strand, 1742106 - 1742015
Alignment:
Q  366 aagatataagctgttttcataaactattatgaa-tttttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataag 456  Q
    |||||||||||||||||||||| |||| |||||   |||||||||||||| |||| | |||| |   |||||||||||| ||||| ||||||    
T  1742106 aagatataagctgttttcataatctatcatgaagagtttatggaaataagttgaagatagcttatgcacatgtcataagttgtttccataag 1742015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 36409388 - 36409442
Alignment:
Q  370 tataagctgttttcataaactattatgaa-tttttatggaaataagctgaaaaaa 423  Q
    |||||||||||||||||||||||||||||   |||||  ||||||||||||||||    
T  36409388 tataagctgttttcataaactattatgaagagtttattcaaataagctgaaaaaa 36409442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 41817201 - 41817254
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataa 455  Q
    |||||||||||||||||||| |  | | |||||||||||||| |||||||||||    
T  41817201 ttatggaaataagctgaaaacaaattatcaacatgtcataagatgttttcataa 41817254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 28677696 - 28677640
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    |||||||||||||| ||||| | || |  || |||||||||||||||||||||||||    
T  28677696 ttatggaaataagccgaaaacaacttatgaaaatgtcataagctgttttcataagtt 28677640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Complemental strand, 29316812 - 29316764
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgtttt 450  Q
    |||||||||||||||||||| | || |  ||||||||||||||||||||    
T  29316812 ttatggaaataagctgaaaagaacttatgaacatgtcataagctgtttt 29316764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 40158751 - 40158807
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    ||||| || ||||||||||| | || |  ||||||||||||||||||||||||||||    
T  40158751 ttatgtaattaagctgaaaacaacttataaacatgtcataagctgttttcataagtt 40158807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 7646239 - 7646292
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataa 455  Q
    |||||||||||||||||||| |||| | ||||||||||||||| ||||||||||    
T  7646239 ttatggaaataagctgaaaatagctgatcaacatgtcataagcagttttcataa 7646292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 10383918 - 10383974
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    |||||||||||||||| ||| |||| |  || |||||||||||||||||||||||||    
T  10383918 ttatggaaataagctgtaaacagcttatgaaaatgtcataagctgttttcataagtt 10383974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 458
Target Start/End: Original strand, 3254263 - 3254314
Alignment:
Q  407 gaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    ||||||||||||||| |||| |  ||||||||||||||||||||| ||||||    
T  3254263 gaaataagctgaaaacagcttatgaacatgtcataagctgttttcttaagtt 3254314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 456
Target Start/End: Complemental strand, 9835937 - 9835883
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataag 456  Q
    ||||||||||||| |||||| |||| |  ||||||||||||||||||| ||||||    
T  9835937 ttatggaaataagatgaaaacagcttatgaacatgtcataagctgtttacataag 9835883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 2458603 - 2458547
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    |||||||||||| ||||||| |||| |  |||||| |||||||||| ||||||||||    
T  2458603 ttatggaaataaactgaaaacagcttatgaacatgccataagctgtcttcataagtt 2458547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 42215343 - 42215287
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    ||||| |||||||||||||| |||| |  |||| |||||||||||||||||| ||||    
T  42215343 ttatgtaaataagctgaaaacagcttatgaacaagtcataagctgttttcattagtt 42215287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 43368731 - 43368683
Alignment:
Q  408 aaataagctgaaaaaagctaaccaacatgtcataagctgttttcataag 456  Q
    ||||||| |||||| ||||||  ||||||||||||| ||||||||||||    
T  43368731 aaataagttgaaaatagctaatgaacatgtcataagttgttttcataag 43368683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 3977341 - 3977398
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagttt 459  Q
    ||||| |||||||||||| | ||||||  |||||||||||||||||||||||||||||    
T  3977341 ttatgaaaataagctgaagacagctaaggaacatgtcataagctgttttcataagttt 3977398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 499769 - 499712
Alignment:
Q  401 tttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    ||||||||||||||||||||| | ||    ||||||||||||||||||||||||||||    
T  499769 tttatggaaataagctgaaaacaacttgttaacatgtcataagctgttttcataagtt 499712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 454
Target Start/End: Complemental strand, 17258952 - 17258868
Alignment:
Q  371 ataagctgttttcataaactattatgaattt-ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcata 454  Q
    ||||||||||||||||||||||  ||||    ||||| |||||||||||||| |||| |  ||||||||||||||| ||||||||    
T  17258952 ataagctgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttcata 17258868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 38728435 - 38728489
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataag 456  Q
    |||||||||||||||||||| |||| |  | ||||||||||||| ||||||||||    
T  38728435 ttatggaaataagctgaaaacagcttaggagcatgtcataagctattttcataag 38728489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 36638780 - 36638833
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataa 455  Q
    ||||||||||||||||||||||||| |  |||||||||||  | ||||||||||    
T  36638780 ttatggaaataagctgaaaaaagcttatgaacatgtcatacacagttttcataa 36638833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 10125755 - 10125699
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    ||||| |||||||||||||| | || | |||||||||||||| ||||| ||||||||    
T  10125755 ttatgaaaataagctgaaaacaccttatcaacatgtcataagttgtttacataagtt 10125699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 17368709 - 17368765
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    ||||||||||||||||||||  ||  |  ||||||||||||| ||||||||||||||    
T  17368709 ttatggaaataagctgaaaactgcatatgaacatgtcataagttgttttcataagtt 17368765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 42573970 - 42573938
Alignment:
Q  261 ctgtttggataaacagcttaattttcagcttat 293  Q
    |||||||||||||||||||||||| ||||||||    
T  42573970 ctgtttggataaacagcttaatttgcagcttat 42573938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 35925722 - 35925779
Alignment:
Q  401 tttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    |||||||||||||| |||||| |||| |  ||||||||||||||||||||||||||||    
T  35925722 tttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagtt 35925779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 31118076 - 31118132
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    |||||||||||||||||||| | || |  ||||||||||||| ||||||||||||||    
T  31118076 ttatggaaataagctgaaaacaactgatgaacatgtcataagatgttttcataagtt 31118132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 295
Target Start/End: Complemental strand, 2194518 - 2194484
Alignment:
Q  261 ctgtttggataaacagcttaattttcagcttatgc 295  Q
    |||||||||||||||||||||||| ||||||||||    
T  2194518 ctgtttggataaacagcttaatttgcagcttatgc 2194484  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 458
Target Start/End: Original strand, 37811887 - 37811941
Alignment:
Q  404 atggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    ||||||||||| |||||| || | |  ||||||||||||||||||||||||||||    
T  37811887 atggaaataagttgaaaacagtttatgaacatgtcataagctgttttcataagtt 37811941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 33723419 - 33723362
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagttt 459  Q
    |||||||||||||||||||| | || |  |||||||||| |||||||| |||||||||    
T  33723419 ttatggaaataagctgaaaacatctcatgaacatgtcatgagctgtttccataagttt 33723362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 293
Target Start/End: Complemental strand, 34619554 - 34619521
Alignment:
Q  260 tctgtttggataaacagcttaattttcagcttat 293  Q
    ||||||||||||||||||||||||| ||||||||    
T  34619554 tctgtttggataaacagcttaatttgcagcttat 34619521  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Original strand, 6292526 - 6292574
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgtttt 450  Q
    ||||| |||||||||||||| |||| |  ||||||||||||||||||||    
T  6292526 ttatgaaaataagctgaaaacagcttatgaacatgtcataagctgtttt 6292574  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 49465702 - 49465646
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    ||||||||||||||| |||||| ||||  ||||||| ||||||||||||||||||||    
T  49465702 ttatggaaataagcttaaaaaacctaatgaacatgtaataagctgttttcataagtt 49465646  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 5391912 - 5391968
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    ||||| ||||||| |||||| |||| |  ||||||||||||||||||||||||||||    
T  5391912 ttatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagtt 5391968  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 39723270 - 39723221
Alignment:
Q  409 aataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    ||||||||||||| |||| |  |||||||||||||||||||| |||||||    
T  39723270 aataagctgaaaacagcttatgaacatgtcataagctgttttgataagtt 39723221  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 459
Target Start/End: Complemental strand, 39723429 - 39723380
Alignment:
Q  410 ataagctgaaaaaagctaaccaacatgtcataagctgttttcataagttt 459  Q
    ||||||| |||| |||| |  |||||||||||||||||||||||||||||    
T  39723429 ataagctaaaaacagcttatgaacatgtcataagctgttttcataagttt 39723380  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 43079652 - 43079685
Alignment:
Q  261 ctgtttggataaacagcttaattttcagcttatg 294  Q
    |||||||||||||||||||||||| |||||||||    
T  43079652 ctgtttggataaacagcttaatttgcagcttatg 43079685  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 45541611 - 45541660
Alignment:
Q  409 aataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    ||||| ||||||| |||| |  ||||||||||||||||||||||||||||    
T  45541611 aataacctgaaaacagcttatgaacatgtcataagctgttttcataagtt 45541660  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 53952080 - 53952137
Alignment:
Q  401 tttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    |||||| |||||||||||||| |||| |  ||||||| || |||||||||||||||||    
T  53952080 tttatgaaaataagctgaaaacagctcatgaacatgttatcagctgttttcataagtt 53952137  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 456
Target Start/End: Complemental strand, 27290936 - 27290884
Alignment:
Q  404 atggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataag 456  Q
    |||||||||||||||||| |||| |    ||||||||||||||||||||||||    
T  27290936 atggaaataagctgaaaacagcttatgggcatgtcataagctgttttcataag 27290884  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 453
Target Start/End: Original strand, 38318992 - 38319044
Alignment:
Q  401 tttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcat 453  Q
    ||||||||||||||||||||| |||| |  ||||||| ||||| |||||||||    
T  38318992 tttatggaaataagctgaaaatagcttatgaacatgttataagttgttttcat 38319044  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 392
Target Start/End: Original strand, 1706606 - 1706644
Alignment:
Q  354 ttgttttcgtagaagatataagctgttttcataaactat 392  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  1706606 ttgttttcgtagaagctataagctgttttcataaactat 1706644  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 458
Target Start/End: Complemental strand, 43886167 - 43886112
Alignment:
Q  403 tatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    ||||||||||||||||||| |||| |  || ||| |||||||||||||||||||||    
T  43886167 tatggaaataagctgaaaatagcttatgaaaatgccataagctgttttcataagtt 43886112  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 452
Target Start/End: Original strand, 44249317 - 44249368
Alignment:
Q  401 tttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttca 452  Q
    |||||| |||||||||||| ||| || | |||||||||||||||||||||||    
T  44249317 tttatgaaaataagctgaagaaaacttatcaacatgtcataagctgttttca 44249368  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 20936266 - 20936209
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagttt 459  Q
    ||||||||||||| |||||| |||| |  ||||| ||||||| |||||||||||||||    
T  20936266 ttatggaaataaggtgaaaacagcttatgaacatatcataagttgttttcataagttt 20936209  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 46090850 - 46090797
Alignment:
Q  403 tatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataag 456  Q
    |||| ||||| |||||||| | ||||| |||||||| |||||||||||||||||    
T  46090850 tatgaaaataggctgaaaacaactaacgaacatgtcttaagctgttttcataag 46090797  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 48719429 - 48719372
Alignment:
Q  401 tttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    |||||| |||||||||||||| |||| || |||||||||||| |  ||||||||||||    
T  48719429 tttatgaaaataagctgaaaacagcttacgaacatgtcataaaccattttcataagtt 48719372  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 1137745 - 1137801
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    |||||||||||| ||||||| | || |  ||||||||||||| ||||||||||||||    
T  1137745 ttatggaaataaactgaaaacaacttatgaacatgtcataagatgttttcataagtt 1137801  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 459
Target Start/End: Original strand, 52172787 - 52172815
Alignment:
Q  431 aacatgtcataagctgttttcataagttt 459  Q
    |||||||||||||||||||||||||||||    
T  52172787 aacatgtcataagctgttttcataagttt 52172815  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 34672940 - 34672908
Alignment:
Q  261 ctgtttggataaacagcttaattttcagcttat 293  Q
    |||||||||||||||||||||||||||||||||    
T  34672940 ctgtttggataaacagcttaattttcagcttat 34672908  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 43219674 - 43219625
Alignment:
Q  409 aataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    ||||||||||||| |||| |  |||||||||||||||||||| |||||||    
T  43219674 aataagctgaaaacagcttatgaacatgtcataagctgttttgataagtt 43219625  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 459
Target Start/End: Complemental strand, 43219833 - 43219784
Alignment:
Q  410 ataagctgaaaaaagctaaccaacatgtcataagctgttttcataagttt 459  Q
    ||||||| |||| |||| |  |||||||||||||||||||||||||||||    
T  43219833 ataagctaaaaacagcttatgaacatgtcataagctgttttcataagttt 43219784  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 31624123 - 31624179
Alignment:
Q  402 ttatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    ||||| ||||||| |||||| |||| |  ||||||||||||||||||||||||||||    
T  31624123 ttatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagtt 31624179  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 459
Target Start/End: Original strand, 696483 - 696532
Alignment:
Q  410 ataagctgaaaaaagctaaccaacatgtcataagctgttttcataagttt 459  Q
    ||||||| |||| |||| |  |||||||||||||||||||||||||||||    
T  696483 ataagctaaaaacagcttatgaacatgtcataagctgttttcataagttt 696532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 696642 - 696691
Alignment:
Q  409 aataagctgaaaaaagctaaccaacatgtcataagctgttttcataagtt 458  Q
    ||||||||||||| |||| |  |||||||||||||||||||| |||||||    
T  696642 aataagctgaaaacagcttatgaacatgtcataagctgttttgataagtt 696691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 32578022 - 32577969
Alignment:
Q  403 tatggaaataagctgaaaaaagctaaccaacatgtcataagctgttttcataag 456  Q
    ||||||||||||||||||| |||| |   |||||||||||| ||||||||||||    
T  32578022 tatggaaataagctgaaaacagctcaaggacatgtcataagttgttttcataag 32577969  T

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Target: scaffold0475 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 11732 - 11685
Alignment:
Q  262 tgtttggataaacagcttaattttcagcttatgcttataagcgcttat 309  Q
    ||||||||||| ||||||||||||||||| ||| | ||||||||||||    
T  11732 tgtttggataatcagcttaattttcagctcatgatcataagcgcttat 11685  T

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