View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2221_high_6 (Length: 463)
Name: NF2221_high_6
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 445
Target Start/End: Complemental strand, 36896209 - 36895776
Alignment:
| Q |
13 |
aatatacaatgtgtcactgagcatatactttggtgttttgaggctggtccccgtttaggtatgtaggagtctagaaaaggcatatataatttgatttatc |
112 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36896209 |
aatatacaatgtgtcactgagcatatacttaggtgttttgaggctggtccccgtttaggtatgtgggagtctagaaaaggcatatataatttgatttatc |
36896110 |
T |
|
| Q |
113 |
tggtctgccatggagttatnnnnnnnnn-gttctagtttaggatggtgatcagagatgacgccctttatgaaaatgatatgtatgtgagtgagatttttg |
211 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36896109 |
tggtctgccatggagttataaaaaaaaaagttctagtttaggatggtgatcagagatgacgccctttatgaaaatgatatgtgtgtgagtgagatttttg |
36896010 |
T |
|
| Q |
212 |
ttccttttggtcctcttgagtgttcctggtatcatgtggcacttgtaaaggaagttcttgagctaataaggaaatgaaaaaggtatagaaatgaaattga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
36896009 |
ttccttttggtcctcttgagtgttcctggtatcatgtggcacttgtaaaggaagttcttgagctaatagggaaatgaaaaaggtatagatatgaaattga |
36895910 |
T |
|
| Q |
312 |
attaaagtatggactaagaaattaggcacgtcaaactgtagaataattgcacagatgcatgataaaaccaagtatttggtttagttttataaatctagta |
411 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36895909 |
attaaagtatgaactaagaaattaggcacgtcaaactgtagaataattgcacagatgcatgataaaaccaagtatttggtttagttttataaatctagta |
36895810 |
T |
|
| Q |
412 |
cctttattgatctaaatgaacctagggttcttaa |
445 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
36895809 |
cctttattgatctaaatgaacctagggttcttaa |
36895776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 445
Target Start/End: Complemental strand, 24222030 - 24221998
Alignment:
| Q |
413 |
ctttattgatctaaatgaacctagggttcttaa |
445 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
24222030 |
ctttgttgatctaaatgaacctagggttcttaa |
24221998 |
T |
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