View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2221_low_1 (Length: 788)

Name: NF2221_low_1
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2221_low_1
NF2221_low_1
[»] chr1 (6 HSPs)
chr1 (414-769)||(32555384-32555736)
chr1 (18-391)||(32555733-32556098)
chr1 (153-251)||(16923093-16923191)
chr1 (581-662)||(16922740-16922821)
chr1 (408-440)||(21516260-21516292)
chr1 (395-441)||(24153163-24153209)
[»] chr4 (3 HSPs)
chr4 (379-442)||(11262875-11262938)
chr4 (391-440)||(41162187-41162236)
chr4 (379-440)||(43845270-43845331)
[»] chr3 (1 HSPs)
chr3 (391-440)||(48933718-48933767)
[»] chr2 (1 HSPs)
chr2 (379-440)||(32634231-32634292)
[»] scaffold0072 (1 HSPs)
scaffold0072 (391-435)||(4864-4908)
[»] chr5 (5 HSPs)
chr5 (380-440)||(36542404-36542464)
chr5 (406-440)||(14959618-14959652)
chr5 (378-439)||(6734013-6734074)
chr5 (406-447)||(11911794-11911835)
chr5 (391-440)||(26516185-26516234)
[»] chr7 (1 HSPs)
chr7 (409-440)||(22388576-22388607)
[»] chr8 (4 HSPs)
chr8 (390-440)||(31296009-31296059)
chr8 (391-441)||(34563136-34563186)
chr8 (391-436)||(26284931-26284976)
chr8 (391-440)||(43907933-43907982)
[»] chr6 (1 HSPs)
chr6 (391-440)||(9833231-9833280)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 414 - 769
Target Start/End: Complemental strand, 32555736 - 32555384
Alignment:
Q  414 tataagcgtttaattaagttgtttatctgaatagtgcattagccaagttaaatatgaacttgtaaagtgtgttggtatgtgtttaataattgaatgttgt 513  Q
    |||||| | ||||||||||||||||||  || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32555736 tataagtgcttaattaagttgtttatccaaacagcgcattagccaagttaaatatgaacttgtaaagtgttttggtatgtgtttaataattgaatgttgt 32555637  T
Q  514 ttgagattaatcttatacctcttcttcatcttcttcttcatgattgccactagcagttctattcgtatctccaaaatcatcattctttgcaaatcttcct 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32555636 ttgagattaatcttatacctcttcttcatcttcttcttcatgattgccactagcagttctatttgtatctccaaaatcatcattctttgcaaatcttcct 32555537  T
Q  614 ctaactcgaggtctgctatcagccagagttttgcggcatgcatactgcatatttggttgcatcatcattagatgaacttcaaaatatgcagtaagaagag 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  32555536 ctaactcgaggtctgctatcagccagagttttgcggcatgcatactgcatatttggttgcatcatcattagatgaacttcaaaatatgcagt---aagag 32555440  T
Q  714 aagtggcttgatatgcaagtaattatagcttgcaaatttatatgtaacattataag 769  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32555439 aagtggcttgatatgcaagtaattatagcttgcaaatttatatgtaacatgataag 32555384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 32556098 - 32555733
Alignment:
Q  18 attaggaccccaattattcagcttccaaatccgtcaaacccaaatttataggagaaatctggagtggaacaggcccatgcaaaaatctatataagctaag 117  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32556098 attaggaccccaattattcagcttccacatccatctaacccaaatttataggagaaatctggagtggaacaggcccatgcaaaaatctatataagctaag 32555999  T
Q  118 taatataagtatactatactaatcaaactattgaatcaaatccatgattgaatggaatagttgcatttgaaggagttcactccactgatatgagcaaata 217  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32555998 taatataagtatactatactgatcaaactattgaatcaaatccatgattgaatggaataattgcatttgaaggagttcactccactgatatgagcaaata 32555899  T
Q  218 tatctgaggaatcaaccatatcatcttcctctttcacaactacctgtagttacagttatcaaataaagcatgattaaaaattattccgatcaaataagta 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||      
T  32555898 tatctgaggaatcaaccatatcatcttcctctttcacaactacctgtagttacagttatcaaatgaagcaggattaaaaattattccaatcaaataag-- 32555801  T
Q  318 gacaagtagataagttcaaatatttcaatctcgggcgcttataacataaatgtattttttattatacatatata 391  Q
          |||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  32555800 ------tagataagttcaaatagttcaatctcgagcgcttataacataaatgtatcttttattatacatatata 32555733  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 16923191 - 16923093
Alignment:
Q  153 tcaaatccatgattgaatggaatagttgcatttgaaggagttcactccactgatatgagcaaatatatctgaggaatcaaccatatcatcttcctcttt 251  Q
    ||||||| |||| || |||||||||||||||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  16923191 tcaaatcaatgagtggatggaatagttgcatttgaaggagttaagtccactgatatgtgcaaagatatctgaggaatcaaccatatcatcttcttcttt 16923093  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 581 - 662
Target Start/End: Complemental strand, 16922821 - 16922740
Alignment:
Q  581 tctccaaaatcatcattctttgcaaatcttcctctaactcgaggtctgctatcagccagagttttgcggcatgcatactgca 662  Q
    |||||||||||||||||||||||||| |||||||||||||| || | |||||| || | |||||| || || ||||||||||    
T  16922821 tctccaaaatcatcattctttgcaaaccttcctctaactcgcggccggctatccgctaaagtttttcgacaagcatactgca 16922740  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 440
Target Start/End: Complemental strand, 21516292 - 21516260
Alignment:
Q  408 ttatgttataagcgtttaattaagttgtttatc 440  Q
    |||||||||||||||||||||||||||||||||    
T  21516292 ttatgttataagcgtttaattaagttgtttatc 21516260  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 24153209 - 24153163
Alignment:
Q  395 atatgatagacacttatgttataagcgtttaattaagttgtttatct 441  Q
    |||||||| |||  ||||||||||| |||||||||||||||||||||    
T  24153209 atatgataaacatatatgttataagtgtttaattaagttgtttatct 24153163  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 379 - 442
Target Start/End: Original strand, 11262875 - 11262938
Alignment:
Q  379 ttatacatatatacttatatgatagacacttatgttataagcgtttaattaagttgtttatctg 442  Q
    ||||||||| |||||||||||||| ||| |||| |||  |||| ||||||||||||||||||||    
T  11262875 ttatacataaatacttatatgataaacatttatcttaatagcgcttaattaagttgtttatctg 11262938  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 41162187 - 41162236
Alignment:
Q  391 acttatatgatagacacttatgttataagcgtttaattaagttgtttatc 440  Q
    ||||| |||||| || ||||||||||||| | ||||||||||||||||||    
T  41162187 acttaaatgataaacgcttatgttataagtgcttaattaagttgtttatc 41162236  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 43845270 - 43845331
Alignment:
Q  379 ttatacatatatacttatatgatagacacttatgttataagcgtttaattaagttgtttatc 440  Q
    ||||||||| |  ||||||| |||||| ||||||||||||||| |||||||| ||| |||||    
T  43845270 ttatacataaactcttatataatagacgcttatgttataagcgcttaattaaattgcttatc 43845331  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 48933718 - 48933767
Alignment:
Q  391 acttatatgatagacacttatgttataagcgtttaattaagttgtttatc 440  Q
    ||||||||||||||||||||||||||||| | ||||||||  ||||||||    
T  48933718 acttatatgatagacacttatgttataagtgcttaattaatctgtttatc 48933767  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 32634292 - 32634231
Alignment:
Q  379 ttatacatatatacttatatgatagacacttatgttataagcgtttaattaagttgtttatc 440  Q
    ||||||||| | |||||| ||||| || |||||| |||||||||| ||||||||||||||||    
T  32634292 ttatacatagacacttatgtgataaacccttatggtataagcgttaaattaagttgtttatc 32634231  T

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Target: scaffold0072 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 4908 - 4864
Alignment:
Q  391 acttatatgatagacacttatgttataagcgtttaattaagttgt 435  Q
    |||||||||||||||| ||||| |||||||| |||||||||||||    
T  4908 acttatatgatagacatttatgctataagcgcttaattaagttgt 4864  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 36542404 - 36542464
Alignment:
Q  380 tatacatatatacttatatgatagacacttatgttataagcgtttaattaagttgtttatc 440  Q
    |||||||| | |||||||||||| | ||||||||||||| ||||||| |||||| ||||||    
T  36542404 tatacataaacacttatatgataaatacttatgttataaacgtttaaataagttttttatc 36542464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 406 - 440
Target Start/End: Complemental strand, 14959652 - 14959618
Alignment:
Q  406 acttatgttataagcgtttaattaagttgtttatc 440  Q
    |||||||||||||| ||||||||||||||||||||    
T  14959652 acttatgttataagtgtttaattaagttgtttatc 14959618  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 6734013 - 6734074
Alignment:
Q  378 attatacatatatacttatatgatagacacttatgttataagcgtttaattaagttgtttat 439  Q
    ||||| |||| | ||||||||||||  ||||||| ||| ||||| |||||||||||||||||    
T  6734013 attatgcataaacacttatatgataatcacttatattagaagcgcttaattaagttgtttat 6734074  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 11911835 - 11911794
Alignment:
Q  406 acttatgttataagcgtttaattaagttgtttatctgaatag 447  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||    
T  11911835 acttatgctattagcgtttaattaagttgtttatccgaatag 11911794  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 440
Target Start/End: Complemental strand, 26516234 - 26516185
Alignment:
Q  391 acttatatgatagacacttatgttataagcgtttaattaagttgtttatc 440  Q
    ||||||||||||  | |||||| |||||||| ||||||||||||||||||    
T  26516234 acttatatgataagcgcttatgctataagcgcttaattaagttgtttatc 26516185  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 440
Target Start/End: Original strand, 22388576 - 22388607
Alignment:
Q  409 tatgttataagcgtttaattaagttgtttatc 440  Q
    ||||||||||||||||||||||||||||||||    
T  22388576 tatgttataagcgtttaattaagttgtttatc 22388607  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 390 - 440
Target Start/End: Complemental strand, 31296059 - 31296009
Alignment:
Q  390 tacttatatgatagacacttatgttataagcgtttaattaagttgtttatc 440  Q
    |||||| |||||| ||||||||  ||||| |||||||||||||||||||||    
T  31296059 tacttacatgataaacacttatactataatcgtttaattaagttgtttatc 31296009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 391 - 441
Target Start/End: Complemental strand, 34563186 - 34563136
Alignment:
Q  391 acttatatgatagacacttatgttataagcgtttaattaagttgtttatct 441  Q
    |||||||||||| |   ||||| ||||||||||||||||||||||||||||    
T  34563186 acttatatgataaatgtttatgctataagcgtttaattaagttgtttatct 34563136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 26284931 - 26284976
Alignment:
Q  391 acttatatgatagacacttatgttataagcgtttaattaagttgtt 436  Q
    |||||||||||| ||||||||| ||||||||  |||||||||||||    
T  26284931 acttatatgataaacacttatgctataagcggctaattaagttgtt 26284976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 43907933 - 43907982
Alignment:
Q  391 acttatatgatagacacttatgttataagcgtttaattaagttgtttatc 440  Q
    |||||||||||| ||| ||||| |||||| ||||||||||| ||||||||    
T  43907933 acttatatgataaacatttatgatataagggtttaattaagatgtttatc 43907982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 9833231 - 9833280
Alignment:
Q  391 acttatatgatagacacttatgttataagcgtttaattaagttgtttatc 440  Q
    |||||||||||| || |||||||||||| |  ||||||||||||||||||    
T  9833231 acttatatgataaacgcttatgttataaacacttaattaagttgtttatc 9833280  T

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