View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2221_low_11 (Length: 367)
Name: NF2221_low_11
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 9e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 2291165 - 2291285
Alignment:
| Q |
238 |
cctttgaattcgtctttcttgtagactgctattcttttgtttgatgttttcctttaaacttgtttgcttacgcagtgcttctgttatatatgaattcata |
337 |
Q |
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| T |
2291165 |
cctttgaattcgtctttcttgtagactgctattcttttgtttgatgttttcctttaaacttgtttgcttacgtaatgcttttgttatatatgaattcata |
2291264 |
T |
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| Q |
338 |
attttttatttatattcttct |
358 |
Q |
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| T |
2291265 |
attttttatttatattcttct |
2291285 |
T |
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Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 2290921 - 2290994
Alignment:
| Q |
19 |
cttccttcttaactcttcatgtgtttttccttcttccctactgttttataaatacgaaatcaagaacacatatt |
92 |
Q |
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| T |
2290921 |
cttccttcttaactcttcatgtgtttttccttcttccctactgttttataaatacgaattcaataacacatatt |
2290994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 2291020 - 2291075
Alignment:
| Q |
89 |
tattgtggattttatattgttacatctacatccaaggtcttggatagattgaaagg |
144 |
Q |
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| T |
2291020 |
tattttggattttatattgttacatctacatccaaggtcttggatagattgaaagg |
2291075 |
T |
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