View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2221_low_13 (Length: 359)
Name: NF2221_low_13
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_low_13 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 111 - 359
Target Start/End: Original strand, 24766112 - 24766358
Alignment:
| Q |
111 |
cattccgacatgacatcaacagtttggcgctattgtttgtttaannnnnnnnnaagtctgttttgtttgcaaacctactgaacgtggtgttaactttaaa |
210 |
Q |
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| T |
24766112 |
cattccgacatgacatcaacaatttggcggtattgtttgtttaatttttttt-aagtc-gttttgtttgcaaacctactgaacgtggtgttaactttaaa |
24766209 |
T |
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| Q |
211 |
tgaaggtgttgaattatgggcattttgtggagcaagcgttggtggcatcatgggatttttacgatggaggactttgttggatgcatgttatttttagttt |
310 |
Q |
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| T |
24766210 |
tgaaggtgttgcattatgggcattttgtggagcaagcgttggtggcatcatgggatttttacgatggaggactttgttggatgtatgttatttttagttt |
24766309 |
T |
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| Q |
311 |
taggtttcagaagtttgtttcatgttataaagactataatttgttcttc |
359 |
Q |
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| T |
24766310 |
taagtttcagaagtttgtttcatgttataaagactataatttgttcttc |
24766358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 24765426 - 24765527
Alignment:
| Q |
13 |
aatattaggcactctttgatttgtttgcaatttaaaagtggtttaatatttatgtttgattgttctttgctacagctggttcttataatgaatgattcca |
112 |
Q |
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| T |
24765426 |
aatattaggcactctttgatttgtttgcaatttaaaagtggtttaatatttatgtttgatggttctttgctacagctggttcttataatgaatgattcca |
24765525 |
T |
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| Q |
113 |
tt |
114 |
Q |
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| T |
24765526 |
tt |
24765527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 47763398 - 47763328
Alignment:
| Q |
36 |
tttgcaatttaaaagtggtttaatatttatgtttgat-tgttctttgctacagctggttcttataatgaat |
105 |
Q |
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| T |
47763398 |
tttgcaatgtaaaagtggtttaatatttatgtttgatgcgtgctttgctacaactggttcttataatgaat |
47763328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 16982293 - 16982354
Alignment:
| Q |
186 |
tactgaacgtggtgttaactttaaatgaaggtgttgaattatgggcattttgtggagcaagc |
247 |
Q |
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| T |
16982293 |
tactgtacgtgatgttcgctttaaatgaaggtgttgcattttggacattttgtggatcaagc |
16982354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 21005107 - 21005047
Alignment:
| Q |
193 |
cgtggtgttaactttaaa-tgaaggtgttgaattatgggcattttgtggagcaagcgttgg |
252 |
Q |
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| T |
21005107 |
cgtggtgttgactttaaaatgaaggtgttgcattacggtcattttgtggagcaagcgttgg |
21005047 |
T |
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