View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2221_low_19 (Length: 323)

Name: NF2221_low_19

Description: NF2221

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2221_low_19

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 98; E-Value: 3e-48

Query Start/End: Original strand, 12 - 209

Target Start/End: Original strand, 8058738 - 8058927

Alignment:

Q	12	catcatcagtgtgcaccatgtatgagttggtcagatactcgtatctatcttggtctcctataataaacatagcacacatgaaatatacatcagaaattac	111	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\| \|\|
T	8058738	catcatctgtgtgcaccatgtatgagttggtgagatacttgtatctatcttggtctcctataataaacatagcacataagaaatataca-----aaata-	8058831	T

Q	112	ttagtattacnnnnnnnnnnnnncctcaaatattagaattggagagttaatatattatcctttgctataagttttaggaactcgtttaccctatttaa	209	Q
		\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8058832	ttagaattacatatatatata--cctcaaatattagaattggagagttaatatattatcctttgctataagttttaggaactcgtttaccctatttaa	8058927	T

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Target: chr4; HSP #2

Raw Score: 31; E-Value: 0.00000003

Query Start/End: Original strand, 292 - 322

Target Start/End: Original strand, 8059011 - 8059041

Alignment:

Q	292	caggtatttccgcacgcacaactgtagagac	322	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8059011	caggtatttccgcacgcacaactgtagagac	8059041	T

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