View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2221_low_20 (Length: 314)
Name: NF2221_low_20
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 53152467 - 53152754
Alignment:
| Q |
12 |
atactaaataaagtggggttgaaaggaag-aaagggaaacaattagaggatataactttcctctcaaaagnnnnnnnnn-ctagagtacacaacaaacac |
109 |
Q |
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| T |
53152467 |
atactaaataaagtggagttgaaaggaaggaaagggaaacaattagaggacataactttcctctcaaaagaaaaaaaaaactagagtacacaacaaacac |
53152566 |
T |
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| Q |
110 |
aacatttcaactctcttaatggcaaaaatctatcctgcaccataagtattcaatgaaattggtagtgatggcatctaaagaaatgtaaaaaatatttcat |
209 |
Q |
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| T |
53152567 |
aacattccaactctcttaatggaaaaaatctatcctgcaccataagtattcaatgaaattggtagtgatggcatctaaagaaatgtaaaaaatatttcat |
53152666 |
T |
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| Q |
210 |
gaaccatgagaaaggaggatgggttcgaaatcataactattgcttcgggtgtataatgggtaggtcaactcaaattttttggtcaaacc |
298 |
Q |
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| T |
53152667 |
gaaccatgagaaaggcggatgggttcgaaatcataactattactt-gggtgtataatggttgggttaactcaaattttttggtcaaacc |
53152754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 30135063 - 30135146
Alignment:
| Q |
90 |
ctagagtacacaacaaacacaacatttcaactctcttaatggcaaaaatctatcctgcaccataagtattcaatgaaattggta |
173 |
Q |
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| T |
30135063 |
ctagagtacacaacaaacacaacattccaactctcttaatggaaaaattatgtcctgaaccataagtattcaaagaaattggta |
30135146 |
T |
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