View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2221_low_21 (Length: 297)
Name: NF2221_low_21
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_low_21 |
 | |
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| [»] chr6 (5 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr4 (6 HSPs) |
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| [»] chr3 (5 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 27878022 - 27878309
Alignment:
| Q |
10 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
27878022 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
27878121 |
T |
|
| Q |
110 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27878122 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
27878221 |
T |
|
| Q |
210 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27878222 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctt |
27878309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 136 - 297
Target Start/End: Complemental strand, 30968287 - 30968126
Alignment:
| Q |
136 |
agaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaag |
235 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30968287 |
agaagccatgagttgagaaaatagcgtattcagggtgttgatgtgattcgttacggatgtggattcacccattcgaagagtgtagagccttctctttaag |
30968188 |
T |
|
| Q |
236 |
aatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30968187 |
aatattctgttgtggagtgatttgacctcgtacaattttattagaatatcccagatctcctt |
30968126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 30968375 - 30968283
Alignment:
| Q |
10 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaag |
102 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
30968375 |
gacatcataaaagtgaagagtatcagatatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaag |
30968283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 47 - 273
Target Start/End: Original strand, 8480156 - 8480382
Alignment:
| Q |
47 |
tttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtga |
146 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| | |||||| ||||| ||||||| || | |||| |
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|
| T |
8480156 |
tttgtaatgttgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgtttattttcagctatcatgaaatctgatgttgtga |
8480255 |
T |
|
| Q |
147 |
gttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgtt |
246 |
Q |
| |
|
| |||| |||||| ||||||| |||||| ||||||| ||| ||| || ||||| |||||| |||||||| || || | |||||||| ||||| | |
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|
| T |
8480256 |
gctgagcaaatagtgtattcatggtgtttatgtgatttgttgtcgatatgtattcattcattcggagagtgtaaagactccattttaagaaaattcttgt |
8480355 |
T |
|
| Q |
247 |
gtggagtgatttgacctcgtacaattt |
273 |
Q |
| |
|
||| ||||| || |||| ||||||||| |
|
|
| T |
8480356 |
gtgaagtgacttcaccttgtacaattt |
8480382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 295
Target Start/End: Complemental strand, 8481247 - 8481114
Alignment:
| Q |
162 |
tattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgac |
261 |
Q |
| |
|
|||||| |||||| ||||||| |||| ||| |||||||| |||||| |||||||||||||| || || ||||| ||| | | || ||||| ||||| |
|
|
| T |
8481247 |
tattcatggtgtttatgtgatttgttattgatatggattcattcattcggagagtgtagagcctccttttcaagaaaattattgtttgaagtgacttgac |
8481148 |
T |
|
| Q |
262 |
ctcgtacaattttattagagtatcccagatctcc |
295 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||| |
|
|
| T |
8481147 |
ctcgtacaatttaataagagtatcctagatctcc |
8481114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 41719414 - 41719127
Alignment:
| Q |
10 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41719414 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
41719315 |
T |
|
| Q |
110 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41719314 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
41719215 |
T |
|
| Q |
210 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41719214 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctt |
41719127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 34353017 - 34352730
Alignment:
| Q |
10 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34353017 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
34352918 |
T |
|
| Q |
110 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
209 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34352917 |
cgctcattctccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
34352818 |
T |
|
| Q |
210 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34352817 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctt |
34352730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 23319295 - 23319009
Alignment:
| Q |
11 |
acatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagcac |
110 |
Q |
| |
|
||||||||||| ||||||| |||| || || || ||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||| |||| |
|
|
| T |
23319295 |
acatcatcaaaatgaagagagtcagcaatattgttgtttgtaatgttgatgatgagttgttcatatgaatgaggtaaactctgaagtagaagttttgcac |
23319196 |
T |
|
| Q |
111 |
gctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcg |
210 |
Q |
| |
|
| |||||||| ||||| ||| ||| || || ||||| |||| |||||| ||||| | ||| || ||||||| |||| ||| |||| ||| ||||| |
|
|
| T |
23319195 |
gttcattttcagctatcatgacatctgaggctgtgagctgagcaaatagtgtatttatggtatttatgtgatttgttattgatatggactcatacattca |
23319096 |
T |
|
| Q |
211 |
aagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
|||||||||| ||| || |||||||| ||||| ||| ||||||||||||||||||||||| || |||| ||| |||||||||| |
|
|
| T |
23319095 |
gagagtgtagaacctcctttttaagaaaattcttgcgtgaagtgatttgacctcgtacaatttaataagagcatcttagatctcctt |
23319009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 31502540 - 31502589
Alignment:
| Q |
41 |
ttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaact |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31502540 |
ttattatttgtaatgttgatgatgagttgatcatacgaatcttgtaaact |
31502589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 48701134 - 48701421
Alignment:
| Q |
10 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48701134 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
48701233 |
T |
|
| Q |
110 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48701234 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
48701333 |
T |
|
| Q |
210 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48701334 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctt |
48701421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 30949496 - 30949783
Alignment:
| Q |
10 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
30949496 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctggagtagaagttcagca |
30949595 |
T |
|
| Q |
110 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
30949596 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattc |
30949695 |
T |
|
| Q |
210 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30949696 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
30949783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 42266907 - 42266620
Alignment:
| Q |
10 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42266907 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
42266808 |
T |
|
| Q |
110 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
42266807 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattc |
42266708 |
T |
|
| Q |
210 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42266707 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctt |
42266620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 1999857 - 1999723
Alignment:
| Q |
48 |
ttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgag |
147 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| |||||||| |||||| ||||||| || || ||||| |
|
|
| T |
1999857 |
ttgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgttcattttcagctattgtgaaatctgaggctgtgag |
1999758 |
T |
|
| Q |
148 |
ttgagaaaatagcgtattcagggtgttgatgtgat |
182 |
Q |
| |
|
||||| |||||| ||||||| ||| || ||||||| |
|
|
| T |
1999757 |
ttgaggaaatagtgtattcatggtatttatgtgat |
1999723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 282
Target Start/End: Original strand, 21514391 - 21514622
Alignment:
| Q |
51 |
taatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttg |
150 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||| |||| | ||||||||||| | | | |||| |||||| |||| |||||| |||| || ||||| |
|
|
| T |
21514391 |
taatgttgacgatgagtttatcatacaaatctgataaaaactaaagtagaagtttaactctctcactttccgttattctgaaatttgaagttgtaagttg |
21514490 |
T |
|
| Q |
151 |
agaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtgg |
250 |
Q |
| |
|
|||||| |||||| ||||| |||||||||| ||| | ||||||||| |||||||||||||||||||||| | ||||||||||||| |||||| |
|
|
| T |
21514491 |
gaaaaataacgtatttagggtattgatgtgatatgttgttgtcttggattcactcattcgaagagtgtagagccttatttttaagaatattcagttgtga |
21514590 |
T |
|
| Q |
251 |
agtgatttgacctcgtacaattttattagagt |
282 |
Q |
| |
|
||| |||||||||||| |||||||| |||||| |
|
|
| T |
21514591 |
agtaatttgacctcgttcaattttactagagt |
21514622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 1999695 - 1999631
Alignment:
| Q |
233 |
aagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
||||| ||||| |||| ||||| ||||||||||||||||| || |||| |||||| |||||||| |
|
|
| T |
1999695 |
aagaaaattcttgtgtgaagtgacttgacctcgtacaatttaataagagcatcccatatctcctt |
1999631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 5822588 - 5822875
Alignment:
| Q |
10 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5822588 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
5822687 |
T |
|
| Q |
110 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5822688 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
5822787 |
T |
|
| Q |
210 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5822788 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctt |
5822875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 2816576 - 2816863
Alignment:
| Q |
10 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
2816576 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctaaagtagaagttcagca |
2816675 |
T |
|
| Q |
110 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2816676 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
2816775 |
T |
|
| Q |
210 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2816776 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattaaagtatcccagatctcctt |
2816863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 42585960 - 42585674
Alignment:
| Q |
11 |
acatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagcac |
110 |
Q |
| |
|
||||||||||| ||||||| ||| || || ||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| |
|
|
| T |
42585960 |
acatcatcaaaatgaagagagtcaacaatattgttatttgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcac |
42585861 |
T |
|
| Q |
111 |
gctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcg |
210 |
Q |
| |
|
| |||||||| |||||| ||||||| || || ||||| |||| |||||| ||||||| ||| || ||||||| |||| ||| |||||||| |||||| |
|
|
| T |
42585860 |
gttcattttcagctattgtgaaatctgaggctgtgagctgagcaaatagtgtattcatggtatttatgtgatttgttattgatatggattcattcattcg |
42585761 |
T |
|
| Q |
211 |
aagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
|||||||||||||| || |||||||| ||||| |||| ||||| ||||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
42585760 |
gagagtgtagagcctcctttttaagaaaattcttgtgtgaagtgacttgacctcgtacaatttaataagagcatcccagatctcctt |
42585674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 297
Target Start/End: Original strand, 47277124 - 47277379
Alignment:
| Q |
41 |
ttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttca--gcacgctcattttccgctattttgaaatcaga |
138 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||| || |||| |||| |||||||||||||| ||| ||||||||||||| || | ||| ||| |
|
|
| T |
47277124 |
ttattgttggtaatgttgatgatgaggtgatcatacaaagatggttaactcagaagtagaagttcaacacacactcattttccgcttttctaaaacgaga |
47277223 |
T |
|
| Q |
139 |
agccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaat |
238 |
Q |
| |
|
|| ||||| ||||||||| || |||||| |||||| ||||||| ||| || |||||||||||| ||| || ||||||| | |||| ||||| ||| |
|
|
| T |
47277224 |
agttgtgagatgagaaaattgcatattcaaggtgtt-atgtgatatgtt--tgacgtggattcacccgttcaaaaagtgtagtgtcttccttttaataat |
47277320 |
T |
|
| Q |
239 |
attctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
||| | ||||| | ||||| | |||||| ||||||||||||||||| || |||||||| |
|
|
| T |
47277321 |
attttattgtgaaatgattatatctcgtataattttattagagtatcacatatctcctt |
47277379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 295
Target Start/End: Complemental strand, 25877693 - 25877552
Alignment:
| Q |
154 |
aaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagt |
253 |
Q |
| |
|
|||||| ||||||| |||||| ||||||| |||| ||| |||||||| ||||| |||||| |||||||| || |||||||| ||||| |||| ||| |
|
|
| T |
25877693 |
aaatagtgtattcatggtgtttatgtgatttgttattgatatggattcattcattcaaagagtatagagcctcctttttaagaaaattcttgtgtgaagt |
25877594 |
T |
|
| Q |
254 |
gatttgacctcgtacaattttattagagtatcccagatctcc |
295 |
Q |
| |
|
|| ||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
25877593 |
gacttgacctcgtacaatttaaaaagagcgtcccagatctcc |
25877552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 9443405 - 9443692
Alignment:
| Q |
10 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
109 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9443405 |
gacatcattaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
9443504 |
T |
|
| Q |
110 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
9443505 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattc |
9443604 |
T |
|
| Q |
210 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9443605 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctt |
9443692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 44 - 297
Target Start/End: Original strand, 24597829 - 24598082
Alignment:
| Q |
44 |
ttatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccg |
143 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| |||||||| |||||| ||||||| || || | |
|
|
| T |
24597829 |
ttatttgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgttcattttcagctattgtgaaatctgaggctg |
24597928 |
T |
|
| Q |
144 |
tgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattct |
243 |
Q |
| |
|
|||| |||| |||||| ||||||| ||| || ||||||| |||| ||| |||||||| |||||| |||||||||||||| || |||||||| ||||| |
|
|
| T |
24597929 |
tgagctgagcaaatagtgtattcatggtatttatgtgatttgttattgatatggattcattcattcggagagtgtagagcctcctttttaagaaaattct |
24598028 |
T |
|
| Q |
244 |
gttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
|||| ||||| ||||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
24598029 |
tgtgtgaagtgacttgacctcgtacaatttaataagagcatcccagatctcctt |
24598082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 826483 - 826196
Alignment:
| Q |
10 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
826483 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
826384 |
T |
|
| Q |
110 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
826383 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattaagggtgttgatgtgatctgttacggatgtggattcacccattc |
826284 |
T |
|
| Q |
210 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
826283 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctt |
826196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 293
Target Start/End: Original strand, 13843110 - 13843393
Alignment:
| Q |
10 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
109 |
Q |
| |
|
||||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||| ||| || || ||| ||||||||||||||| || |
|
|
| T |
13843110 |
gacatcatcaaagtgaagagtgtcaactatattgttatttgtaatgttgatgatgagttgatcatacaaatttgatatactatgaagtagaagttcaaca |
13843209 |
T |
|
| Q |
110 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
209 |
Q |
| |
|
|||||||||| |||||| |||||||||||| || |||||||||||||| ||||||| ||| || ||||||| |||| ||||||||||||| ||||| |
|
|
| T |
13843210 |
tgctcattttctgctattatgaaatcagaagttgtaagttgagaaaatagtgtattcaaggtcttaatgtgatatgttattgatgtggattcactcattc |
13843309 |
T |
|
| Q |
210 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatct |
293 |
Q |
| |
|
||||||||||||||| | |||||||||||| |||| || ||| |||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
13843310 |
taagagtgtagagcctcccatttaagaatattatgttatgaagttatttgacctcgtacaattttattagagtgtcctagatct |
13843393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 294
Target Start/End: Original strand, 8137771 - 8138055
Alignment:
| Q |
10 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
109 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| || |
|
|
| T |
8137771 |
gacattatcaaagtgaagagtatcagctatgttattatttggaatgttgatgatgagttgatcatacaaatatggtaaactctgaagtagaagttccaca |
8137870 |
T |
|
| Q |
110 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
209 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | || || |||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
8137871 |
cgctcattttccgctattttgaaattagaagttgggattttagaaaataccgtattcagggtgttgatgtgatctgttatgaatgtggattcacccattc |
8137970 |
T |
|
| Q |
210 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctc |
294 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8137971 |
gaagagtgtagagcctcctctttaagaatattctgttgcggagtgatttgacctcgtacaattttattagagtatccccgatctc |
8138055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 46452619 - 46452552
Alignment:
| Q |
51 |
taatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagcacgctcatttt |
119 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| |||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
46452619 |
taatgttgatgatgagttcatcatagga-tctaataaactatgaagtagaagtttagcacactcatttt |
46452552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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