View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2221_low_23 (Length: 278)
Name: NF2221_low_23
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_low_23 |
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| [»] scaffold0595 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 8330453 - 8330191
Alignment:
| Q |
1 |
ttgagagtcaggttcatgcaatgaaacataacatatattaaagggtggttgatcttttcttcattttctagttctaacacaaaattaacttgannnnnnn |
100 |
Q |
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| T |
8330453 |
ttgagagtcaggttcatgcaatgaaacataacatatattaaagggtggttgatcttttcttcattttccagttctaacacaaaattaacttgattttttt |
8330354 |
T |
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| Q |
101 |
cttgagaaaatgacaacactaattgaaataggatnnnnnnnttgatgcattgttataacttaccactgcaactccatgttgtactatcactggctccttt |
200 |
Q |
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| T |
8330353 |
cttgagaaaatgacaatactaattgaaatagaataaaaaaattgatgcattgttataacttaccactgcaactccatgttgtactatcactggctccttt |
8330254 |
T |
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| Q |
201 |
ttcttagtcacattgttcttaacctcagatcgaccttctggaatcctttgaatgctaagaatg |
263 |
Q |
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| T |
8330253 |
ttcttagtcacattgttcttaacctcagatcgaccttctggaatcctttgaatgctaagaatg |
8330191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 142 - 263
Target Start/End: Complemental strand, 8337095 - 8336974
Alignment:
| Q |
142 |
ttgatgcattgttataacttaccactgcaactccatgttgtactatcactggctcctttttcttagtcacattgttcttaacctcagatcgaccttctgg |
241 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8337095 |
ttgatggattgttgtaacttaccactgcaactccatgttgtactatcactggctccttcttcttagtcacattgctcttaacctcagatcgaccttctgg |
8336996 |
T |
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| Q |
242 |
aatcctttgaatgctaagaatg |
263 |
Q |
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| T |
8336995 |
aatcctttgaatgctaagaatg |
8336974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 156 - 263
Target Start/End: Complemental strand, 8341283 - 8341176
Alignment:
| Q |
156 |
taacttaccactgcaactccatgttgtactatcactggctcctttttcttagtcacattgttcttaacctcagatcgaccttctggaatcctttgaatgc |
255 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
8341283 |
taacttaccacaaaaactccatgttgtactatcactggttccttcttcttagtcacattgctcttagcctcagatcgaccttctggaatcctttgaatgc |
8341184 |
T |
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| Q |
256 |
taagaatg |
263 |
Q |
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|||||||| |
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| T |
8341183 |
taagaatg |
8341176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0595 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 156 - 263
Target Start/End: Complemental strand, 5290 - 5183
Alignment:
| Q |
156 |
taacttaccactgcaactccatgttgtactatcactggctcctttttcttagtcacattgttcttaacctcagatcgaccttctggaatcctttgaatgc |
255 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
5290 |
taacttaccacaaaaactccatgttgtactatcactggttccttcttcttagtcacattgctcttagcctcagatcgaccttctggaatcctttgaatgc |
5191 |
T |
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| Q |
256 |
taagaatg |
263 |
Q |
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|||||||| |
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| T |
5190 |
taagaatg |
5183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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