View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2221_low_25 (Length: 263)
Name: NF2221_low_25
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_low_25 |
 | |
|
| [»] scaffold0252 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0252 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 22537 - 22419
Alignment:
| Q |
119 |
ttataagaacaataatactaaaattcctccaaacttttatctatccacttcattgttgtcattagtccaccctcgagtgtggaaatcgtatgtgtttgat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22537 |
ttataagaacaataatactaaaattcctccaaacttttatc----cacttcattgttgtcattagtccaccctcgagtgtggaaatcgtatgtgtttgat |
22442 |
T |
|
| Q |
219 |
tagcaattgtttggttttgtgta |
241 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
22441 |
tagcaattgtttggttttgtgta |
22419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22655 - 22611
Alignment:
| Q |
1 |
agatcatggattgactagggtgctttataatataattaagctatt |
45 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22655 |
agatcatggattgactagggtgttttataatataattaagctatt |
22611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 34660234 - 34660334
Alignment:
| Q |
135 |
actaaaattcctccaaacttttatctatccacttcattgttgtcattagtccaccctcgagtgtggaaatcgtatgtgtttgattagcaattgtttggtt |
234 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
34660234 |
actaaaattcctccaaacttttatc----cacttcattgttgtcattagtccaccctcaagtgtgaaaatcttatgtgtttgattaacaattgtttggtt |
34660329 |
T |
|
| Q |
235 |
ttgtg |
239 |
Q |
| |
|
||||| |
|
|
| T |
34660330 |
ttgtg |
34660334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34660103 - 34660147
Alignment:
| Q |
1 |
agatcatggattgactagggtgctttataatataattaagctatt |
45 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
34660103 |
agatcatggattgattagggtgctttataatataaataagctatt |
34660147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 26864544 - 26864619
Alignment:
| Q |
160 |
tatccacttcattgttgtcattagtccaccctcgagtgtggaaatcgtatgtgtttgattagcaattgtttggttt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
26864544 |
tatccacttcattgttgtcattagtccaccctcaagtgtggaaatcttatgagtttgattagtaattgtttggttt |
26864619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University