View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2221_low_3 (Length: 589)
Name: NF2221_low_3
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 52 - 503
Target Start/End: Original strand, 33998081 - 33998526
Alignment:
| Q |
52 |
aagcttgagacaaaccactgaaacagtaattcatatcacgagataagtgactttttcttttgtaaagataaaagtcaaatacaggctattatagcttata |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33998081 |
aagcttgagacaaaccactgaaacagtaattcatatcacgagataagtgactttttcttttgtaaagataaaagtcaaatacaggctattatagcttata |
33998180 |
T |
|
| Q |
152 |
caagaattgaaaaataagtttggttgagtcgagtgatattgggattagttcttggtactaataaagcgaaaagtattgctttaaataggtacacaaacac |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33998181 |
caagaattgaaaaataagtttggttgagtcgagtgatattgggattagctcttggtactaataaagcgaaaagtattgctttaaataggtacacaaaca- |
33998279 |
T |
|
| Q |
252 |
aaacaggtcatgataaacaagtaagtcaataacacttatcaaacaaaaactcaatgttatcaggtttaggattctgtatgtctaaataaagcagaacatt |
351 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33998280 |
-----gttcatgataaacaagtaagtcaataacacttatcaaacaaaaactcaatgttatcaggtttagggttctgtatgtctaaataaagcagaacatt |
33998374 |
T |
|
| Q |
352 |
atttaagctgttaataaaaaactgaacagagaaactctatcaatgttttcttttaactcatgcaactcacctttcttttgtgatctaataccatgcccat |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33998375 |
atttaagctgttaataaaaaactgaacagagaaactctatcaatgttttctcttaactcatgcaactcacctttcttttgtgatctaataccatgcccat |
33998474 |
T |
|
| Q |
452 |
gtaatgatgaagaactgagccagctgaagcgacagggcgtaaacctcctgtg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33998475 |
gtaatgatgaagaactgagccagctgaagcgacagggcgtaaacctcctgtg |
33998526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University