View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2221_low_32 (Length: 250)
Name: NF2221_low_32
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_low_32 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 21194288 - 21194525
Alignment:
| Q |
13 |
aatattagaaagtggatcactcccttgttcacacaccatggcaacactctcagcttcagctccatttccaactatcacattagatctcactgaagaagct |
112 |
Q |
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| T |
21194288 |
aatattagaaagtggatcactcccttgttcacacaccatggcaacactctcagcttcagctccatttccaactatcacgttagatctaactgaagaagct |
21194387 |
T |
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| Q |
113 |
atcaataattcctcacaaaaacaactacaacaaggacagtttaacctccttcaaccctttttggctcagaaatttatgtcaggttcaaatatttttggaa |
212 |
Q |
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| T |
21194388 |
atcaataattcctcacaaaaacaactacaacaaggacagtttaacctccttcatccctttttggctcagaaatttatgtcaggttcaaatatttttggaa |
21194487 |
T |
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| Q |
213 |
tggaaaatgcttcatttgttgatacagttagtgctgca |
250 |
Q |
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| T |
21194488 |
tggaaaatgcttcatttgttgatacagttagtgctgca |
21194525 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 8496830 - 8496777
Alignment:
| Q |
49 |
catggcaacactctcagcttcagctccatttccaactatcacattagatctcac |
102 |
Q |
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|||||| ||||| ||||||||||| |||||||| ||| | |||||||||||||| |
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| T |
8496830 |
catggctacactttcagcttcagcaccatttcctactgttacattagatctcac |
8496777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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