View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2221_low_33 (Length: 250)

Name: NF2221_low_33
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2221_low_33
NF2221_low_33
[»] chr1 (4 HSPs)
chr1 (85-240)||(15997110-15997265)
chr1 (1-55)||(15997052-15997106)
chr1 (63-119)||(14653686-14653742)
chr1 (63-119)||(14663477-14663533)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 85 - 240
Target Start/End: Original strand, 15997110 - 15997265
Alignment:
Q  85 ccgtaataagttgttaggagctaaatttcctcctgtaacgtccatgcaatctactatttgcattttgatctagtcaagaaaccatgtgtctagaaagtta 184  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15997110 ccgtaataagttgttaggagctaaatttcctcctgtaacatccatgcaatctactatttgcattttgatctagtcaagaaaccatgtgtctagaaagtta 15997209  T
Q  185 ccaaaagtcgaagcatggaattgttagaatccgatgaaagtaagcatacctctctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15997210 ccaaaagtcgaagcatggaattgttagaatccgatgaaagtaagcatacctctctg 15997265  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15997052 - 15997106
Alignment:
Q  1 caagtattcatatgtcttgcatcccaaaggtgatgaattataggacaaagacaac 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15997052 caagtattcatatgtcttgcatcccaaaggtgatgaattataggacaaagacaac 15997106  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 14653686 - 14653742
Alignment:
Q  63 tggtgagaatgattgacctttcccgtaataagttgttaggagctaaatttcctcctg 119  Q
    |||| |||||||||||||||||  |||||||| |||| |||| ||||||| ||||||    
T  14653686 tggtaagaatgattgacctttcatgtaataagctgtttggagataaattttctcctg 14653742  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 14663477 - 14663533
Alignment:
Q  63 tggtgagaatgattgacctttcccgtaataagttgttaggagctaaatttcctcctg 119  Q
    |||| |||||||||||||||||  |||||||| |||| |||| ||||||| ||||||    
T  14663477 tggtaagaatgattgacctttcatgtaataagctgtttggagataaattttctcctg 14663533  T

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