View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2221_low_37 (Length: 238)

Name: NF2221_low_37
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2221_low_37
NF2221_low_37
[»] chr7 (13 HSPs)
chr7 (18-225)||(4864374-4864584)
chr7 (20-225)||(4653948-4654153)
chr7 (88-225)||(4711578-4711715)
chr7 (24-225)||(4696632-4696833)
chr7 (23-225)||(4845453-4845655)
chr7 (20-225)||(4783273-4783478)
chr7 (20-225)||(4815702-4815907)
chr7 (24-225)||(4673155-4673356)
chr7 (39-225)||(4637309-4637495)
chr7 (24-156)||(4644216-4644348)
chr7 (94-156)||(4631451-4631513)
chr7 (184-225)||(4644159-4644200)
chr7 (24-65)||(4711526-4711567)
[»] chr4 (1 HSPs)
chr4 (117-225)||(18925280-18925385)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 4864584 - 4864374
Alignment:
Q  18 cagttgaagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4864584 cagttgaagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattca 4864485  T
Q  118 aatcaaaccaaatgagaagctaagcataactttcattcca---aacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtg 214  Q
    ||||||| ||||||||||||||| |||||||||||||||    || || |||||||| ||||||||||||||||| |||||||| ||||| ||| | |||    
T  4864484 aatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtg 4864385  T
Q  215 tctatgccttc 225  Q
    |||||||||||    
T  4864384 tctatgccttc 4864374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 4654153 - 4653948
Alignment:
Q  20 gttgaagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaa 119  Q
    |||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||     
T  4654153 gttgaagtaaacaacaaacttacacttcttaaaaacttcaatccttcactttggattcatgatgatggggaaacaatcaccaaagaatattgcatccaag 4654054  T
Q  120 tcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctat 219  Q
    || |||| ||| ||||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  4654053 tccaaccgaataagaagctaaacataactttcattcccaacaacacaaaccattcaaatccttattatgctttcattaatggaattgaagttgtgtctat 4653954  T
Q  220 gccttc 225  Q
    ||||||    
T  4653953 gccttc 4653948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 4711578 - 4711715
Alignment:
Q  88 ggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattat 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711578 ggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattat 4711677  T
Q  188 gctttcattaacggaatcgaaattgtgtctatgccttc 225  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4711678 gctttcattaacggaatcgaaattgtgtctatgccttc 4711715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 4696632 - 4696833
Alignment:
Q  24 aagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaa 123  Q
    |||||||||||||  |||||||||||||||||||||||||||| |||||| |  || | ||||  ||||||||||||||||||||||||||||||| |||    
T  4696632 aagtaaacaacaacgttacccttcttaaaaacttcaacccttctctttggttctatcatgatgacgaaaaaatcaccaaagaatattgcattcaaaccaa 4696731  T
Q  124 accaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgcct 223  Q
    ||||||||||||| ||| ||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||||| ||| ||||||| ||||||    
T  4696732 accaaatgagaagttaaacataactttcattcccagcaacataaaccagtcaaatccttattatgctttcattaacggaatagaagttgtgtcaatgcct 4696831  T
Q  224 tc 225  Q
    ||    
T  4696832 tc 4696833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 4845453 - 4845655
Alignment:
Q  23 gaagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatca 122  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||||||| ||||||| || | ||||||||| |||||||||||||||||||| ||||    
T  4845453 gaagtaaacaacaatcttacccttcttaaaaacttcagcccttcactttggcttcatgacgaggtggaaaaaattaccaaagaatattgcattcagatca 4845552  T
Q  123 aaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgcc 222  Q
    ||||||||| |||||||| |||||||||| |||| |||||||||||  | |  ||||||| |||||||||| |||||||||||||| ||||||| |||||    
T  4845553 aaccaaatgggaagctaaacataactttctttccgaacaacataaacgaattgaatcctttttatgctttcgttaacggaatcgaagttgtgtcgatgcc 4845652  T
Q  223 ttc 225  Q
    |||    
T  4845653 ttc 4845655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 4783273 - 4783478
Alignment:
Q  20 gttgaagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaa 119  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| | |||| | |  | |||  ||||||||||| ||| ||||    
T  4783273 gttgaagtaaacaacaacattacccttcttaaaaacttcaacccttcactttggcttcatcatgatgagaatcatatcgtcaaagaatattccatccaaa 4783372  T
Q  120 tcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctat 219  Q
    |||||||||| |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  ||||||||||||||||||||||||| ||||||||||    
T  4783373 tcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgattcctagttatgctttcattaacggaatcgaagttgtgtctat 4783472  T
Q  220 gccttc 225  Q
    ||||||    
T  4783473 gccttc 4783478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 4815702 - 4815907
Alignment:
Q  20 gttgaagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaa 119  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| | |||| | |  | |||  ||||||||||| ||| ||||    
T  4815702 gttgaagtaaacaacaacattacccttcttaaaaacttcaacccttcactttggcttcatcatgatgagaatcatatcgtcaaagaatattccatccaaa 4815801  T
Q  120 tcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctat 219  Q
    |||||||||| |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  ||||||||||||||||||||||||| ||||||||||    
T  4815802 tcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgagtcctagttatgctttcattaacggaatcgaagttgtgtctat 4815901  T
Q  220 gccttc 225  Q
    ||||||    
T  4815902 gccttc 4815907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 4673356 - 4673155
Alignment:
Q  24 aagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaa 123  Q
    |||| |||||||| ||||||||||||||||||||||||||||  ||||||||||||||  ||| ||||| |||||||||||||| ||| || ||||||||    
T  4673356 aagttaacaacaatattacccttcttaaaaacttcaaccctttcctttggattcatgattatgaggaaacaatcaccaaagaattttgtatccaaatcaa 4673257  T
Q  124 accaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgcct 223  Q
     || ||||||||||||| ||||| ||||||||||| || ||| ||  | ||||||  | | |||||||||||||||||||||||||||||||| ||||||    
T  4673256 gcccaatgagaagctaaacataaatttcattccaagcatcatgaacaaatcaaatgttaaatatgctttcattaacggaatcgaaattgtgtcaatgcct 4673157  T
Q  224 tc 225  Q
    ||    
T  4673156 tc 4673155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 39 - 225
Target Start/End: Complemental strand, 4637495 - 4637309
Alignment:
Q  39 ttacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagct 138  Q
    |||||||||||||||||||||||||||  |||||| |  ||   ||||  |||||||||||||||||||||||||| ||||||||||||||||| ||| |    
T  4637495 ttacccttcttaaaaacttcaaccctttgctttggctctattttgatgacgaaaaaatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagtt 4637396  T
Q  139 aagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgccttc 225  Q
    || ||||||||||||||| |||| |||||| || |||||||||| ||||||||| |||||||| |||||| ||||||| ||||||||    
T  4637395 aaacataactttcattcctaacagcataaaccaatcaaatccttgttatgcttttattaacgggatcgaagttgtgtcaatgccttc 4637309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 4644348 - 4644216
Alignment:
Q  24 aagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaa 123  Q
    |||||||||||||  | ||||||||| ||||||||||||||||||||||| ||||| | |||| | | || |||| |||||| |||||||| ||||| ||    
T  4644348 aagtaaacaacaatctcacccttcttcaaaacttcaacccttcactttggcttcatcatgatgagaataatatcatcaaagagtattgcatccaaattaa 4644249  T
Q  124 accaaatgagaagctaagcataactttcattcc 156  Q
    | ||||||||||||||| |||||||||||||||    
T  4644248 aacaaatgagaagctaaacataactttcattcc 4644216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 4631513 - 4631451
Alignment:
Q  94 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 156  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| |||||||||||||||    
T  4631513 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 4631451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 4644200 - 4644159
Alignment:
Q  184 ttatgctttcattaacggaatcgaaattgtgtctatgccttc 225  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  4644200 ttatgctttcattaacggaatcgaagttgtgtctatgccttc 4644159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 4711526 - 4711567
Alignment:
Q  24 aagtaaacaacaaaattacccttcttaaaaacttcaaccctt 65  Q
    |||||||||||||  ||||||||||||||||||||| |||||    
T  4711526 aagtaaacaacaatcttacccttcttaaaaacttcagccctt 4711567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 18925280 - 18925385
Alignment:
Q  117 aaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtc 216  Q
    |||| ||||||| ||||||| |||  ||||||||||||||||||| |||||||||  ||||  |   |||||||||||| |||||||| || || |||||    
T  18925280 aaatgaaaccaactgagaagttaaatataactttcattccaaacaccataaatcaaccaaaggc---ttatgctttcatcaacggaattgagatcgtgtc 18925376  T
Q  217 tatgccttc 225  Q
     ||||||||    
T  18925377 catgccttc 18925385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University