View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2221_low_7 (Length: 460)
Name: NF2221_low_7
Description: NF2221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2221_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 8059067 - 8059511
Alignment:
| Q |
1 |
aaatgggtggtcaactctctctaagagttttaacgctgttgtatgtccaagactaaatttaaaccaagagttagaaagagaaaatgaaatacataccaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||| |
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| T |
8059067 |
aaatgggtggtcaactctctctaagagttttaacgttgttgtatgtccaagactaaatttaaacctagagtgagagagagaa--tgaaatacataccaaa |
8059164 |
T |
|
| Q |
101 |
gatcatggcgagtgctatataaacagatgaaggtatattagggcaaataaagggaccaacaaccaaaggaagaaccatactaacaacctccaacccatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
8059165 |
gatcatggcgagtgctatataaacagatgaaggtatattagggcaaataaaggggccaacaaccaaaggaagaaccaaactaacaacctccaattcattc |
8059264 |
T |
|
| Q |
201 |
acctttccaaactctaaaacactcttttcagtcataattttagacaccaaataagaagatccaacaaggtcactacttctacaaatatcaatatcactcc |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8059265 |
acttttccaaactctaaaacactcttttcagtcataattttagacaccaaataagaagatccaacaaggttactacttctacaaatatcaatatcactcc |
8059364 |
T |
|
| Q |
301 |
aaatatcttcatctaccacatcaagattcttatcattgaacaaaaccgttgctgcactagaagtgtaaaccacttttttcactgtctttgattccaaaca |
400 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8059365 |
aaatatcttcatccaccacatcaagattcttatcattgaacaaaaccgttgctgcactagaagtgtaaaccacttttttcactgtctttgattccaaaca |
8059464 |
T |
|
| Q |
401 |
tgctttcaaaattcctagggttccttccactgctctttttgtcacct |
447 |
Q |
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| T |
8059465 |
tgctttcaaaatttctagggttccttccactgctctttttgtcacct |
8059511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 29597561 - 29597514
Alignment:
| Q |
13 |
aactctctctaagagttttaacgctgttgtatgtccaagactaaattt |
60 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| |||||||| ||||| |
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| T |
29597561 |
aactctctctaagagttttaacgttgttgcatgcccaagactgaattt |
29597514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 3649099 - 3649149
Alignment:
| Q |
13 |
aactctctctaagagttttaacgctgttgtatgtccaagactaaatttaaa |
63 |
Q |
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||||||| ||||||||||||||| ||||| ||| ||||||||| ||||||| |
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| T |
3649099 |
aactctccctaagagttttaacgttgttgcatgcccaagactagatttaaa |
3649149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 34483549 - 34483496
Alignment:
| Q |
13 |
aactctctctaagagttttaacgctgttgtatgtccaagactaaatttaaacca |
66 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||| ||||| ||||| |
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|
| T |
34483549 |
aactatctctaagagttttaacgctgttgcatgtccaagactgaatttgaacca |
34483496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 30614735 - 30614786
Alignment:
| Q |
13 |
aactctctctaagagttttaacgctgttgtatgtccaagactaaatttaaac |
64 |
Q |
| |
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|||||||||||||||||||||||||| || ||| |||| |||||||| |||| |
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| T |
30614735 |
aactctctctaagagttttaacgctgatgcatgcccaaaactaaattcaaac |
30614786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 50518607 - 50518653
Alignment:
| Q |
13 |
aactctctctaagagttttaacgctgttgtatgtccaagactaaatt |
59 |
Q |
| |
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|||||||||||||||||| |||| ||||| |||||||||||| |||| |
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|
| T |
50518607 |
aactctctctaagagtttcaacgttgttgcatgtccaagactgaatt |
50518653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 8968855 - 8968896
Alignment:
| Q |
11 |
tcaactctctctaagagttttaacgctgttgtatgtccaaga |
52 |
Q |
| |
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|||||||| ||||||||||||||| |||||| |||||||||| |
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| T |
8968855 |
tcaactctttctaagagttttaacactgttgcatgtccaaga |
8968896 |
T |
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