View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2222_high_1 (Length: 448)
Name: NF2222_high_1
Description: NF2222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2222_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 38306475 - 38306907
Alignment:
| Q |
1 |
ctcccttcaggattcagtgattcatcaagatgttgaaggnnnnnnn-tagaagctgatcatattcaacaaaaattctgtattagaccattatgacttaag |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38306475 |
ctcccttcaggattcagtgattcatcaagatgttgaaggaaaaaaaatagaagctgatcatattcaacaaaaattctgtattagaccattatgatttaag |
38306574 |
T |
|
| Q |
100 |
catatacatccactaaagtttctgctcaacatatcactataatgtcgtaaccctacacatctatatcactaccataccttttccctactgatctttggga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38306575 |
catatacatccactaaagtttctgctcaacatatcactataatgtcgtaaccctacacatctatatcactaccataccttttccctactgatctttggga |
38306674 |
T |
|
| Q |
200 |
acaaaccaatattcattaagacaggaaaaatggcagttcagaatgtttgagtaatgagtaagcatggctactgatgtgtgatcctatttagaatcatgtc |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38306675 |
acaaaccaatattcattaagacaggaaaaatggcagttcagaatgtttgagtaatgagtaagcatggctactgatgtgtgatcctatttagaatcatgtc |
38306774 |
T |
|
| Q |
300 |
cccaagttcattctctgatgtctgtctaatcgatccgtccaccaaactcaacatcgggaagnnnnnnnagtttgttccctgcaaaacataatcatttgaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
38306775 |
cccaagttcattctctgatgtctgtctaatcgatccgtccaccaaactcaacattgggaagtttttttagtttgttccctgcaaaacataatcatttgaa |
38306874 |
T |
|
| Q |
400 |
taagccacgtaaagcacaagtgatatagcatta |
432 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
38306875 |
taagccacgtaaagcacaagtgatatagcatta |
38306907 |
T |
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