View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2222_high_5 (Length: 243)
Name: NF2222_high_5
Description: NF2222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2222_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 38307121 - 38306897
Alignment:
| Q |
18 |
gaaagttgtgcttttacatttcaataacaggacgacaaatgaagaggaaaaaactgtcttattttatgatcatgtggagtgatgattaaaaagaacaaag |
117 |
Q |
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| T |
38307121 |
gaaagttgtgcttttacatttcaataacaggacgacaaatgaagaggaaaaaactgtcttattttatgatcatgtggagtgatgattaaaaagaacaaag |
38307022 |
T |
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| Q |
118 |
ttaggtgcactttctaatttactgattttgtactctaaaatttaaacttaactgaaaaatttcatctacatgtcatatgggccagacagttaacatattc |
217 |
Q |
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| T |
38307021 |
ttaggtgcactttctaatttactgattttgtactctaaaatttaaa-ttaactgaaaaatttcatctacatgtcatatgggccagacagttaacatattc |
38306923 |
T |
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| Q |
218 |
tttcatggataatgataatgctatat |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
38306922 |
tttcatggataatgataatgctatat |
38306897 |
T |
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