View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2222_low_4 (Length: 334)
Name: NF2222_low_4
Description: NF2222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2222_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 11250529 - 11250833
Alignment:
| Q |
18 |
actgggtggttttagaaatgttctataactttaattcatgttttggcttggtaaa-gttgaatgactgtgcacccaaaagcttcatcttttgaattgata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11250529 |
actgggtggttttagaaatgttctataactttaattcatgttttggcttggtaaaagttgaatgactgtgcaaccaaaagcttcatcttttgaattgata |
11250628 |
T |
|
| Q |
117 |
aacggaaaaattatnnnnnnnnnggtagattccttaacataaaagacaagtaatattatgtaaaaagtttttcatnnnnnnnnnnnnnngatatggatat |
216 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11250629 |
agcggaaaaattataaaaaaa--ggtagattccttaacataaaagacaagtaatattatgtaaaaagtttttcataaaaaaagaaaaaagatatggatat |
11250726 |
T |
|
| Q |
217 |
ggatcttgtggtaaaagttttaaatggatcctgtagtgtggtaccatgtccaaaagtatggaacatgcaaagaataacttgattaatgaaaaatcaccag |
316 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11250727 |
ggatcttgtggtaaaagttttaaatggttcctgtagtgtggtaccatgtccaaaagtatggaacatgcaaagaataacttgattaatgaaaaatcaccag |
11250826 |
T |
|
| Q |
317 |
ctttcat |
323 |
Q |
| |
|
||||||| |
|
|
| T |
11250827 |
ctttcat |
11250833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University