View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2222_low_5 (Length: 319)

Name: NF2222_low_5
Description: NF2222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2222_low_5
NF2222_low_5
[»] chr4 (44 HSPs)
chr4 (20-169)||(24420633-24420788)
chr4 (19-169)||(24470838-24470993)
chr4 (27-165)||(24420877-24421015)
chr4 (262-314)||(24420488-24420540)
chr4 (39-162)||(24470720-24470843)
chr4 (39-169)||(24421065-24421195)
chr4 (39-145)||(24470959-24471065)
chr4 (41-145)||(24420561-24420665)
chr4 (41-169)||(24421161-24421289)
chr4 (262-314)||(24471086-24471138)
chr4 (39-133)||(24477064-24477158)
chr4 (68-165)||(24421213-24421310)
chr4 (41-165)||(24420493-24420617)
chr4 (65-123)||(24477392-24477450)
chr4 (68-165)||(24470413-24470510)
chr4 (68-129)||(24470605-24470666)
chr4 (64-165)||(24477638-24477739)
chr4 (262-314)||(24406425-24406477)
chr4 (262-314)||(24406527-24406579)
chr4 (262-314)||(24420872-24420924)
chr4 (41-169)||(24470626-24470754)
chr4 (262-314)||(24476790-24476842)
chr4 (41-169)||(24477394-24477522)
chr4 (47-150)||(24470488-24470591)
chr4 (86-169)||(24481477-24481559)
chr4 (47-169)||(24421113-24421235)
chr4 (64-162)||(24421360-24421458)
chr4 (64-162)||(24470265-24470363)
chr4 (65-138)||(24471033-24471106)
chr4 (68-152)||(24477459-24477543)
chr4 (39-150)||(24421324-24421435)
chr4 (41-144)||(24470913-24471016)
chr4 (39-165)||(24420781-24420907)
chr4 (39-169)||(24470528-24470658)
chr4 (262-312)||(24470799-24470849)
chr4 (65-150)||(24420604-24420689)
chr4 (44-169)||(24420921-24421046)
chr4 (41-162)||(24470434-24470555)
chr4 (266-314)||(24420392-24420440)
chr4 (19-123)||(24421063-24421167)
chr4 (101-165)||(24421405-24421469)
chr4 (64-96)||(24421495-24421527)
chr4 (64-96)||(24470196-24470228)
chr4 (101-165)||(24470254-24470318)
[»] scaffold0879 (7 HSPs)
scaffold0879 (41-169)||(4485-4613)
scaffold0879 (39-169)||(4579-4709)
scaffold0879 (68-165)||(4464-4561)
scaffold0879 (27-132)||(4759-4864)
scaffold0879 (44-169)||(4536-4661)
scaffold0879 (44-169)||(4728-4853)
scaffold0879 (19-123)||(4607-4711)
[»] chr1 (6 HSPs)
chr1 (53-168)||(11879442-11879557)
chr1 (100-145)||(11902373-11902418)
chr1 (80-168)||(11879661-11879749)
chr1 (39-117)||(52821569-52821647)
chr1 (41-141)||(11879526-11879626)
chr1 (53-165)||(11902038-11902150)
[»] chr2 (7 HSPs)
chr2 (39-168)||(41899851-41899980)
chr2 (44-145)||(41899922-41900023)
chr2 (74-169)||(41900234-41900329)
chr2 (51-169)||(41900282-41900400)
chr2 (39-147)||(41899824-41899932)
chr2 (262-312)||(41900571-41900621)
chr2 (101-165)||(41900574-41900638)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 24420788 - 24420633
Alignment:
Q  20 ccaccacctccatctccctctcctcc------atatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctc 113  Q
    ||||||||||||||||||||||||||      ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |||||||    
T  24420788 ccaccacctccatctccctctcctcccccaccatatgtttacaagtcaccacctccaccgtctccatccccaccacctccatacgtttataaatctcctc 24420689  T
Q  114 ctccgccatctccttcaccacctcctccatatatctacatgtcaccaccaccacca 169  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  24420688 ctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccacca 24420633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 24470838 - 24470993
Alignment:
Q  19 accaccacctccatctccctctcctcc-----atatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctc 113  Q
    |||||| ||||||||||||||||||||     ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  24470838 accacctcctccatctccctctcctccccaccatatgtttacaagtcaccacctccaccgtctccatccccaccacctccatacgtttataagtcacctc 24470937  T
Q  114 ctccgccatctccttcaccacctcctccatatatctacatgtcaccaccaccacca 169  Q
    ||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24470938 ctccagcatctccttcaccacctcctccatatatctacaagtcaccaccaccacca 24470993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 24421015 - 24420877
Alignment:
Q  27 ctccatctccctctcctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctcc 126  Q
    ||||||| ||| |||| |||||||| |||||||||| ||||||||| || ||||| |||||||||||||| || ||||| ||||| || || ||||| ||    
T  24421015 ctccatccccccctccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtctacaaatctccacccccaccatcacc 24420916  T
Q  127 ttcaccacctcctccatatatctacatgtcaccaccacc 165  Q
    |||||| ||||| |||||| | || | ||||||||||||    
T  24420915 ttcaccccctccaccatatgtatataagtcaccaccacc 24420877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 24420540 - 24420488
Alignment:
Q  262 accatctccttcaccccctccaccctatgtctataagtcacctccacctcctt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24420540 accatctccttcaccccctccaccctatgtctataagtcacctccacctcctt 24420488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 162
Target Start/End: Original strand, 24470720 - 24470843
Alignment:
Q  39 ctcctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcc 138  Q
    ||||||||||||| |||||||||| ||||||||| || ||||| |||||||| ||||| || ||||| ||||| || || ||||| |||||||| |||||    
T  24470720 ctcctccatatgtctacaagtcaccacctccaccatccccatctccaccaccaccatatgtctacaaatctccacccccaccatcaccttcaccccctcc 24470819  T
Q  139 tccatatatctacatgtcaccacc 162  Q
     |||||| | || | |||||||||    
T  24470820 accatatgtatataagtcaccacc 24470843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 24421195 - 24421065
Alignment:
Q  39 ctcctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcc 138  Q
    ||||||||||||| |||||||||| ||| ||||| || ||||| ||||||||||||||  |||||||||| || || || ||||| || ||||| |||||    
T  24421195 ctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcaccccctcc 24421096  T
Q  139 tccatatatctacatgtcaccaccaccacca 169  Q
     |||||||| |||| ||| || || ||||||    
T  24421095 accatatatatacaagtctcctcctccacca 24421065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 24470959 - 24471065
Alignment:
Q  39 ctcctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcc 138  Q
    ||||||||||| | |||||||||| ||| ||||| || || || ||||| ||||||||||| || ||||| |||||||| || ||||||||||| |||||    
T  24470959 ctcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatacgtctataagtcccctcctcctccttctccttcaccccctcc 24471058  T
Q  139 tccatat 145  Q
    |||||||    
T  24471059 tccatat 24471065  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 24420665 - 24420561
Alignment:
Q  41 cctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctc 140  Q
    ||||||||| | |||||||||| ||| ||||| || || || |||||||||||||| || || ||||| |||||||| || ||||||||||| |||||||    
T  24420665 cctccatatatctacaagtcaccaccaccaccatccccttcaccaccacctccatatgtctataagtcccctcctcctccttctccttcaccccctcctc 24420566  T
Q  141 catat 145  Q
    |||||    
T  24420565 catat 24420561  T

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Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 24421289 - 24421161
Alignment:
Q  41 cctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctc 140  Q
    ||||||||||| |||||||| |  |||||||| || || || || || || || || ||||||||||| || || || ||||| |||||||| |||||||    
T  24421289 cctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccttatgtttacaagtcaccaccacctccatccccttcacctcctcctc 24421190  T
Q  141 catatatctacatgtcaccaccaccacca 169  Q
    ||||| |||||| ||||||||||||||||    
T  24421189 catatgtctacaagtcaccaccaccacca 24421161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 24471086 - 24471138
Alignment:
Q  262 accatctccttcaccccctccaccctatgtctataagtcacctccacctcctt 314  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  24471086 accatctccttcacctcctccaccctatgtccataagtcacctccacctcctt 24471138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 24477158 - 24477064
Alignment:
Q  39 ctcctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcacca 133  Q
    ||||||||||||| || ||| ||| |||||| || ||||||||||||||||||||||| |||||||| ||||| || || ||||| ||| |||||    
T  24477158 ctcctccatatgtctataaggcaccacctcctccatctccatccccaccacctccatatgtttacaaatctccacccccaccatcccctccacca 24477064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 24421310 - 24421213
Alignment:
Q  68 ccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatatatctacatgtcaccaccacc 165  Q
    ||||| |||||||| |||||||||||||| || ||||||||||||||||| ||||| || ||||| || || || ||| | |||| ||||||||||||    
T  24421310 ccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccttatgtttacaagtcaccaccacc 24421213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 24420617 - 24420493
Alignment:
Q  41 cctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctc 140  Q
    ||||||||||| || ||||| |  ||||| |||||||| || || || |||||||| |||||||| |||||||| || |||||||||||||| ||||| |    
T  24420617 cctccatatgtctataagtcccctcctcctccttctccttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccac 24420518  T
Q  141 catatatctacatgtcaccaccacc 165  Q
    | ||| |||| | |||||| |||||    
T  24420517 cctatgtctataagtcacctccacc 24420493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 24477450 - 24477392
Alignment:
Q  65 cctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatc 123  Q
    |||| |||||||||||| |||||||||||||| || ||||||||||||||||| |||||    
T  24477450 cctctaccttctccatcaccaccacctccatatgtctacaagtctcctcctccaccatc 24477392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 24470413 - 24470510
Alignment:
Q  68 ccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatatatctacatgtcaccaccacc 165  Q
    ||||| |||||||| |||||||||||||| || ||||||||||||||||| ||| | || ||||| || || || ||| | |||| ||||||||||||    
T  24470413 ccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccaacaccctcacctcccccgccctatgtttacaagtcaccaccacc 24470510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 24470605 - 24470666
Alignment:
Q  68 ccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttc 129  Q
    ||||| |||||||| |||||||||||||| || ||||||||||||||||| ||||| |||||    
T  24470605 ccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccttc 24470666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 24477739 - 24477638
Alignment:
Q  64 acctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatatatctacatgtcaccacca 163  Q
    ||||||||  || ||||| |||||||| || || || || ||||||||||| || |||||||| |||||||||||||||||| | |||| ||| ||||||    
T  24477739 acctccacgatccccatcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcaccacctcctccatatgtgtacaagtccccacca 24477640  T
Q  164 cc 165  Q
    ||    
T  24477639 cc 24477638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 24406477 - 24406425
Alignment:
Q  262 accatctccttcaccccctccaccctatgtctataagtcacctccacctcctt 314  Q
    ||||||||||||||| |||||||| ||||||| ||||||||| ||||||||||    
T  24406477 accatctccttcacctcctccaccttatgtctttaagtcaccaccacctcctt 24406425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 24406579 - 24406527
Alignment:
Q  262 accatctccttcaccccctccaccctatgtctataagtcacctccacctcctt 314  Q
    ||||||||||||||| |||||||| ||||||| ||||||||| ||||||||||    
T  24406579 accatctccttcacctcctccaccttatgtctttaagtcaccaccacctcctt 24406527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 24420924 - 24420872
Alignment:
Q  262 accatctccttcaccccctccaccctatgtctataagtcacctccacctcctt 314  Q
    |||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  24420924 accatcaccttcaccccctccaccatatgtatataagtcaccaccacctcctt 24420872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 24470626 - 24470754
Alignment:
Q  41 cctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctc 140  Q
    ||||||||||| |||||||| |  |||||||| || || || || || || || ||  |||| ||||| || || || |||||||||||||| |||||||    
T  24470626 cctccatatgtctacaagtctcctcctccaccatcaccttctcctcccccaccctatatttataagtcgccaccacctccatctccttcacctcctcctc 24470725  T
Q  141 catatatctacatgtcaccaccaccacca 169  Q
    ||||| |||||| ||||||||| ||||||    
T  24470726 catatgtctacaagtcaccacctccacca 24470754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 24476842 - 24476790
Alignment:
Q  262 accatctccttcaccccctccaccctatgtctataagtcacctccacctcctt 314  Q
    ||||||||||||||| || ||| |||||||||||||||||| |||||||||||    
T  24476842 accatctccttcacctcccccatcctatgtctataagtcacatccacctcctt 24476790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 24477522 - 24477394
Alignment:
Q  41 cctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctc 140  Q
    ||||||||||| |||||||||| |||||| || ||||| || || || || ||||| || ||||||  ||||||||  || ||||| |||||||| ||||    
T  24477522 cctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctacaagagtcctcctctaccttctccatcaccaccacctc 24477423  T
Q  141 catatatctacatgtcaccaccaccacca 169  Q
    ||||| |||||| ||| || || ||||||    
T  24477422 catatgtctacaagtctcctcctccacca 24477394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 24470488 - 24470591
Alignment:
Q  47 tatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatata 146  Q
    |||||||||||||||| ||| || ||||| || || || || |||||||| || |||||||| || ||||| |||||||||||||| || || ||||||     
T  24470488 tatgtttacaagtcaccaccacctccttccccttcacctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatg 24470587  T
Q  147 tcta 150  Q
    ||||    
T  24470588 tcta 24470591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 24481559 - 24481477
Alignment:
Q  86 ccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatatatctacatgtcaccaccaccacca 169  Q
    ||||||||||| || ||||||||||||||||| |||||||| |||||||| || |||||| | |||| ||| ||||| ||||||    
T  24481559 ccacctccatatgtctacaagtctcctcctccaccatctccatcaccacc-ccaccatatgtatacaagtcgccacctccacca 24481477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 24421235 - 24421113
Alignment:
Q  47 tatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatata 146  Q
    |||||||||||||||| ||| || || || || || || || |||||||| || |||||||| || || || ||||| || || ||||| ||||||||||    
T  24421235 tatgtttacaagtcaccaccacctccatccccttcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatata 24421136  T
Q  147 tctacatgtcaccaccaccacca 169  Q
    | |||| ||| ||||||||||||    
T  24421135 tttacaagtccccaccaccacca 24421113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 162
Target Start/End: Complemental strand, 24421458 - 24421360
Alignment:
Q  64 acctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatatatctacatgtcaccacc 162  Q
    ||||||||| ||||| || ||||| ||||| || || |||||||| || || || |||||||| || || |||||||||||| |||||| |||||||||    
T  24421458 acctccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacctccatctccctctcctcctcctccatatgtctacaagtcaccacc 24421360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 162
Target Start/End: Original strand, 24470265 - 24470363
Alignment:
Q  64 acctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatatatctacatgtcaccacc 162  Q
    ||||||||| ||||| || ||||| ||||| || || |||||||| || || || |||||||| || || |||||||||||| |||||| |||||||||    
T  24470265 acctccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacctccatctccctctcctcctcctccatatgtctacaagtcaccacc 24470363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 24471033 - 24471106
Alignment:
Q  65 cctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcc 138  Q
    ||||| |||||||| || || || |||||||| |||||||| |||||||| || |||||||||||||| |||||    
T  24471033 cctcctccttctccttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcacctcctcc 24471106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 24477543 - 24477459
Alignment:
Q  68 ccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatatatctaca 152  Q
    ||||| ||||| || || ||||||||||| || |||||||| || ||||| |||||||||||||| || || |||||| ||||||    
T  24477543 ccaccatctccctcacctccacctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctaca 24477459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 24421435 - 24421324
Alignment:
Q  39 ctcctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcc 138  Q
    ||||||| ||||| |||||||| | ||| || || ||||| || || || |||||||| || |||||||| || ||||| |||||||||||||| || ||    
T  24421435 ctcctccgtatgtgtacaagtccccaccacctccatctccctctcctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctccccc 24421336  T
Q  139 tccatatatcta 150  Q
     |||||| ||||    
T  24421335 accatatgtcta 24421324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 24470913 - 24471016
Alignment:
Q  41 cctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctc 140  Q
    |||||||| ||||| |||||||  |||||| | ||||| || ||||| ||||||||  | |||||||| || || || ||||| ||||||||||| ||||    
T  24470913 cctccatacgtttataagtcacctcctccagcatctccttcaccacctcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctc 24471012  T
Q  141 cata 144  Q
    ||||    
T  24471013 cata 24471016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 24420907 - 24420781
Alignment:
Q  39 ctcctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcc 138  Q
    |||| |||||||| || ||||||| ||| || ||||| || ||||| || |||||||| ||||||||||| || || || ||||| ||||| || |||||    
T  24420907 ctccaccatatgtatataagtcaccaccacctccttccccttcccctcctcctccatatgtttacaagtccccacccccaccatcaccttctcctcctcc 24420808  T
Q  139 tccatatatctacatgtcaccaccacc 165  Q
     || ||||| || | ||| ||||||||    
T  24420807 accctatatttataagtcgccaccacc 24420781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 24470528 - 24470658
Alignment:
Q  39 ctcctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcc 138  Q
    ||||||||||||| |||||||||| |||||| || ||||| || || || || ||||| || || |||  ||| || || || ||||| |||||||| ||    
T  24470528 ctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacc 24470627  T
Q  139 tccatatatctacatgtcaccaccaccacca 169  Q
    ||||||| |||||| ||| || || ||||||    
T  24470628 tccatatgtctacaagtctcctcctccacca 24470658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 24470799 - 24470849
Alignment:
Q  262 accatctccttcaccccctccaccctatgtctataagtcacctccacctcc 312  Q
    |||||| ||||||||||||||||| ||||| ||||||||||| || |||||    
T  24470799 accatcaccttcaccccctccaccatatgtatataagtcaccacctcctcc 24470849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 24420689 - 24420604
Alignment:
Q  65 cctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatatatcta 150  Q
    |||||||| ||||| || ||||| ||||||||  | |||||||| || || || ||||| ||||||||||| ||||||||| ||||    
T  24420689 cctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccacctccatatgtcta 24420604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 24421046 - 24420921
Alignment:
Q  44 ccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccat 143  Q
    |||||||| || || |||| ||| || || ||||||||||| || || ||||| || |||||||| || ||||| ||||| || || ||||| |||||||    
T  24421046 ccatatgtatataaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccat 24420947  T
Q  144 atatctacatgtcaccaccaccacca 169  Q
    || ||||||  || ||||| ||||||    
T  24420946 atgtctacaaatctccacccccacca 24420921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 24470434 - 24470555
Alignment:
Q  41 cctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctc 140  Q
    ||||||||||| |||||||| |  ||||||||  | || || || || || || || ||||||||||| || || || || || |||||||| |||||||    
T  24470434 cctccatatgtctacaagtctcctcctccaccaacaccctcacctcccccgccctatgtttacaagtcaccaccacctccttccccttcacctcctcctc 24470533  T
Q  141 catatatctacatgtcaccacc 162  Q
    ||||| |||||| |||||||||    
T  24470534 catatgtctacaagtcaccacc 24470555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 24420440 - 24420392
Alignment:
Q  266 tctccttcaccccctccaccctatgtctataagtcacctccacctcctt 314  Q
    ||||| ||||| |||||||| |||| |||||||||||| ||||||||||    
T  24420440 tctccatcacctcctccaccatatggctataagtcaccgccacctcctt 24420392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 24421167 - 24421063
Alignment:
Q  19 accaccacctccatctccctctcctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccg 118  Q
    ||||||| | ||||||||  | ||||||||| |||||||||| | ||| ||||| || ||||| || || || |||||  | |||||||||||||||||     
T  24421167 accaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcaccccctccaccatatatatacaagtctcctcctcca 24421068  T
Q  119 ccatc 123  Q
    |||||    
T  24421067 ccatc 24421063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 24421469 - 24421405
Alignment:
Q  101 tacaagtctcctcctccgccatctccttcaccacctcctccatatatctacatgtcaccaccacc 165  Q
    ||||| ||||| ||||| |||||||| |||||||||||||| ||| | |||| ||| ||||||||    
T  24421469 tacaaatctccacctccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacc 24421405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 24421527 - 24421495
Alignment:
Q  64 acctccaccttctccatccccaccacctccata 96  Q
    |||||||||||||||||| ||||||||||||||    
T  24421527 acctccaccttctccatcgccaccacctccata 24421495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 24470196 - 24470228
Alignment:
Q  64 acctccaccttctccatccccaccacctccata 96  Q
    |||||||||||||||||| ||||||||||||||    
T  24470196 acctccaccttctccatcgccaccacctccata 24470228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 24470254 - 24470318
Alignment:
Q  101 tacaagtctcctcctccgccatctccttcaccacctcctccatatatctacatgtcaccaccacc 165  Q
    ||||| ||||| ||||| |||||||| |||||||||||||| ||| | |||| ||| ||||||||    
T  24470254 tacaaatctccacctccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacc 24470318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 4485 - 4613
Alignment:
Q  41 cctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctc 140  Q
    ||||||||||| |||||||| |  |||||||| || || || || || || ||||| ||||||||||| || || || ||||| |||||||| |||||||    
T  4485 cctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccatatgtttacaagtcaccaccacctccatccccttcacctcctcctc 4584  T
Q  141 catatatctacatgtcaccaccaccacca 169  Q
    ||||| |||||| ||||||||||||||||    
T  4585 catatgtctacaagtcaccaccaccacca 4613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 4579 - 4709
Alignment:
Q  39 ctcctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcc 138  Q
    ||||||||||||| |||||||||| ||| ||||| || ||||| ||||||||||||||  |||||||||| || || || ||||| || ||||| |||||    
T  4579 ctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcaccccctcc 4678  T
Q  139 tccatatatctacatgtcaccaccaccacca 169  Q
     |||||||| |||| ||| || || ||||||    
T  4679 accatatatatacaagtctcctcctccacca 4709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 4464 - 4561
Alignment:
Q  68 ccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatatatctacatgtcaccaccacc 165  Q
    ||||| |||||||| |||||||||||||| || ||||||||||||||||| ||||| || ||||| || || |||||| | |||| ||||||||||||    
T  4464 ccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccatatgtttacaagtcaccaccacc 4561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 4759 - 4864
Alignment:
Q  27 ctccatctccctctcctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctcc 126  Q
    ||||||| ||| |||| |||||||| |||||||||| ||||||||| || ||||| |||||||||||||| || ||||| ||||| || || ||||| ||    
T  4759 ctccatccccccctccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtctacaaatctccacccccaccatcacc 4858  T
Q  127 ttcacc 132  Q
    ||||||    
T  4859 ttcacc 4864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 4536 - 4661
Alignment:
Q  44 ccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccat 143  Q
    ||||||||||||||||||| ||| || || || || || || || |||||||| || |||||||| || || || ||||| || || ||||| |||||||    
T  4536 ccatatgtttacaagtcaccaccacctccatccccttcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccat 4635  T
Q  144 atatctacatgtcaccaccaccacca 169  Q
    |||| |||| ||| ||||||||||||    
T  4636 atatttacaagtccccaccaccacca 4661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 4728 - 4853
Alignment:
Q  44 ccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccat 143  Q
    |||||||| || || |||| ||| || || ||||||||||| || || ||||| || |||||||| || ||||| ||||| || || ||||| |||||||    
T  4728 ccatatgtatataaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccat 4827  T
Q  144 atatctacatgtcaccaccaccacca 169  Q
    || ||||||  || ||||| ||||||    
T  4828 atgtctacaaatctccacccccacca 4853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 4607 - 4711
Alignment:
Q  19 accaccacctccatctccctctcctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccg 118  Q
    ||||||| | ||||||||  | ||||||||| |||||||||| | ||| ||||| || ||||| || || || |||||  | |||||||||||||||||     
T  4607 accaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcaccccctccaccatatatatacaagtctcctcctcca 4706  T
Q  119 ccatc 123  Q
    |||||    
T  4707 ccatc 4711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 168
Target Start/End: Original strand, 11879442 - 11879557
Alignment:
Q  53 tacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatatatctaca 152  Q
    |||||||||| ||| |||||  |||| || ||||||||||| || || |||||||| || || |||||||||||||||||||| ||||| ||| | ||||    
T  11879442 tacaagtcaccaccaccaccaactccttcaccaccacctccttatgtgtacaagtcaccaccaccgccatctccttcaccaccacctccttatgtgtaca 11879541  T
Q  153 tgtcaccaccaccacc 168  Q
     |||||||||||||||    
T  11879542 agtcaccaccaccacc 11879557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 11902373 - 11902418
Alignment:
Q  100 ttacaagtctcctcctccgccatctccttcaccacctcctccatat 145  Q
    ||||||||||||||| || |||||||| ||||||||||||||||||    
T  11902373 ttacaagtctcctccaccaccatctccctcaccacctcctccatat 11902418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 11879661 - 11879749
Alignment:
Q  80 tccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatatatctacatgtcaccaccaccacc 168  Q
    ||||||||||| ||||||  ||||||||||||||| || |||||||| ||||| || || ||||||  ||||| ||| || ||||||||    
T  11879661 tccccaccaccaccatactattacaagtctcctccaccaccatctccctcacctccaccaccatattactacaagtctcccccaccacc 11879749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 52821647 - 52821569
Alignment:
Q  39 ctcctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctcc 117  Q
    |||| |||||||  |||||||| | |||||||||||| |||||||| |||||||| || || |||||||| || |||||    
T  52821647 ctccaccatatgagtacaagtctccacctccaccttccccatcccctccacctccttatgtatacaagtcaccacctcc 52821569  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 11879526 - 11879626
Alignment:
Q  41 cctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctc 140  Q
    ||||| ||||| |||||||||| ||| ||||| || || ||||||||||| ||||||   ||||||  |||||| || || ||||||||||| || ||||    
T  11879526 cctccttatgtgtacaagtcaccaccaccaccctcaccttccccaccaccaccatactactacaagagtcctccaccaccttctccttcacctccacctc 11879625  T
Q  141 c 141  Q
    |    
T  11879626 c 11879626  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 11902038 - 11902150
Alignment:
Q  53 tacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatatatctaca 152  Q
    |||||||||| ||| |||||  || | || ||||||||||| || || |||||||| || || || ||||||||||||||  | ||||| ||| | ||||    
T  11902038 tacaagtcaccaccaccaccaacttcttcaccaccacctccttatgtatacaagtcaccaccaccaccatctccttcaccgtcacctccttatgtgtaca 11902137  T
Q  153 tgtcaccaccacc 165  Q
     ||||||||||||    
T  11902138 agtcaccaccacc 11902150  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 41899980 - 41899851
Alignment:
Q  39 ctcctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcc 138  Q
    |||||||||||||||||||||| | ||| || ||||| || || || || |||||||| |  |||||||||||||| || ||||| |||||||| |||||    
T  41899980 ctcctccatatgtttacaagtccccaccaccgccttccccgtcaccccctcctccatatgcgtacaagtctcctcccccaccatcaccttcaccgcctcc 41899881  T
Q  139 tccatatatctacatgtcaccaccaccacc 168  Q
    ||||||| | |||| ||| ||||| |||||    
T  41899880 tccatatgtttacaagtctccacctccacc 41899851  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 41900023 - 41899922
Alignment:
Q  44 ccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccat 143  Q
    |||||||| |||||||| | ||| |||||||| || || ||||| |||||||| ||||||||||| || || ||||| || || ||||| ||||||||||    
T  41900023 ccatatgtctacaagtccccaccaccaccttccccctcaccacctcctccatatgtttacaagtccccaccaccgccttccccgtcaccccctcctccat 41899924  T
Q  144 at 145  Q
    ||    
T  41899923 at 41899922  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 41900329 - 41900234
Alignment:
Q  74 tctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatatatctacatgtcaccaccaccacca 169  Q
    ||||| || |||||||||||||| || ||||||||||||||||| |||||| | |||| ||| | | | || ||||||| ||| ||||||||||||    
T  41900329 tctccttcaccaccacctccatatgtctacaagtctcctcctccaccatctgcatcactacccctttcttacatctacaagtccccaccaccacca 41900234  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 169
Target Start/End: Complemental strand, 41900400 - 41900282
Alignment:
Q  51 tttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcctccatatatcta 150  Q
    |||||||||||| ||| || |||||||| || |  || || ||||| || ||||| |||||||| || || |||||||||||||| ||||||||| ||||    
T  41900400 tttacaagtcaccaccacctccttctccttcacttcctccaccatatgtctacaaatctcctccacctccctctccttcaccaccacctccatatgtcta 41900301  T
Q  151 catgtcaccaccaccacca 169  Q
    || ||| || || ||||||    
T  41900300 caagtctcctcctccacca 41900282  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 41899932 - 41899824
Alignment:
Q  39 ctcctccatatgtttacaagtcacaacctccaccttctccatccccaccacctccatacgtttacaagtctcctcctccgccatctccttcaccacctcc 138  Q
    ||||||||||||  |||||||| |  || ||||| || || || || || |||||||| |||||||||||||| ||||| || ||| ||||||| |||||    
T  41899932 ctcctccatatgcgtacaagtctcctcccccaccatcaccttcaccgcctcctccatatgtttacaagtctccacctccaccttcttcttcacctcctcc 41899833  T
Q  139 tccatatat 147  Q
     ||||||||    
T  41899832 accatatat 41899824  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 41900621 - 41900571
Alignment:
Q  262 accatctccttcaccccctccaccctatgtctataagtcacctccacctcc 312  Q
    ||||||||||||||| |||||||| ||| | ||||||||||| ||||||||    
T  41900621 accatctccttcaccacctccaccttatatttataagtcaccaccacctcc 41900571  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 41900638 - 41900574
Alignment:
Q  101 tacaagtctcctcctccgccatctccttcaccacctcctccatatatctacatgtcaccaccacc 165  Q
    ||||| ||||| || || |||||||||||||||||||| || ||||| || | ||||||||||||    
T  41900638 tacaaatctccaccaccaccatctccttcaccacctccaccttatatttataagtcaccaccacc 41900574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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