View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2223_high_1 (Length: 240)
Name: NF2223_high_1
Description: NF2223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2223_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 24960492 - 24960294
Alignment:
| Q |
20 |
agaagggacattgttgaagtgtttcccttcgcaaattcaagcaatgacagtgatgaccgtgttggatattttgtcaagtcattcgccggatgaggaatat |
119 |
Q |
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| T |
24960492 |
agaagtgacattgttgaagtgtttcccttcacaaattcaagcaatgacggtgatgaccgtgttggatattttgtcaagtcattcgccggatgaggaatat |
24960393 |
T |
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| Q |
120 |
cttggagaaacgattgaaccggcttggcaagaggaaccaatgattaaagctgcttttgaaaagtttaaagggaggttgatggagcttgaaggtatagta |
218 |
Q |
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| T |
24960392 |
cttggagaaacgattgaaccggcatggcaagaggaaccaatgattaaagctgcttttgaaaagtttaaagggaggttgatggagcttgaaggtatagta |
24960294 |
T |
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