View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2223_high_2 (Length: 235)
Name: NF2223_high_2
Description: NF2223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2223_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 38521311 - 38521094
Alignment:
| Q |
2 |
gggggcatttaaagagtgaaaaataaaggatctgcctatacaagggttgtataagagggaagttttccagaatcacaaagaagcgtaaatgtatgtggga |
101 |
Q |
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| T |
38521311 |
gggggcatttaaagagtgaaaaataaaggatcttcctatacaagggttgtataagagggaagttttccggaatcacaaagaagtgcaaatgtatgtggga |
38521212 |
T |
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| Q |
102 |
caagatgacacatgggataagaaaagtagtaaaggagatgttggaagaataaagagggtaagtgtaaaaatcttgtggtggaaactaaagtccgtaaaat |
201 |
Q |
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| T |
38521211 |
caagatgacacatgggataagaaaagtagtaaaggagatgttggaagaataaagagggtaagtgtaaaaatcttgtgatggaaactaaagtccgtaaaat |
38521112 |
T |
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| Q |
202 |
aaaagttaggataaaaag |
219 |
Q |
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| T |
38521111 |
aaaagttaggataaaaag |
38521094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 7130942 - 7130881
Alignment:
| Q |
97 |
tgggacaagatgacacatgggataagaaaagtagtaaaggagatgttggaagaataaagagg |
158 |
Q |
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| T |
7130942 |
tgggacaagatgacacatgggattacaaaagtagtaaaagggatgttgggagaatcaagagg |
7130881 |
T |
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