View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2223_low_3 (Length: 214)
Name: NF2223_low_3
Description: NF2223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2223_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 39630657 - 39630835
Alignment:
| Q |
15 |
cacagatacaaggtaaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaggatgtgcag |
114 |
Q |
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| T |
39630657 |
cacagatacaaggtaaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaagatgtgcag |
39630756 |
T |
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| Q |
115 |
ctcatggttgaaacaggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaact |
193 |
Q |
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| T |
39630757 |
ctcatggttgaaacaggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaact |
39630835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 39641443 - 39641621
Alignment:
| Q |
15 |
cacagatacaaggtaaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaggatgtgcag |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
39641443 |
cacaaatacaaggtaaacaagacacaaggcttctatctttctaattttgtctagtaatgcattctttatgattcatcttttaatgcaggaagatgtgcag |
39641542 |
T |
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| Q |
115 |
ctcatggttgaaacaggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaact |
193 |
Q |
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| T |
39641543 |
ctcatggttgaaacaggtcttgaagcctatagattttccatttcttggtcaagattgataccaagtattccactgaact |
39641621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 29121814 - 29121992
Alignment:
| Q |
15 |
cacagatacaaggtaaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaggatgtgcag |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29121814 |
cacaaatacaaggtaaacaagacacaaggcttctatctttctaattttgtccggtaatgcattctttctgattcatcttttaatgcaggaagatgtgcaa |
29121913 |
T |
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| Q |
115 |
ctcatggttgaaacaggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaact |
193 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29121914 |
ctcatggttgaaacaggcctcgatgcctataggttttccatttcttggtcaagattgataccaagtattctactgaact |
29121992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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